Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14a12
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0197 - 15522167-15523524,15525416-15525683 30 1.2
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 30 1.6
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 29 2.7
05_07_0350 - 29457444-29457871,29458786-29461456 29 3.6
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 29 3.6
02_05_1081 + 33971950-33972606 29 3.6
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 29 3.6
07_03_1257 - 25241194-25242018 28 4.8
07_01_1113 - 10292781-10293299 28 4.8
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320... 28 4.8
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413... 28 4.8
03_06_0711 - 35682293-35682952 28 4.8
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 28 4.8
03_01_0056 - 471338-471919,472013-472213 28 6.3
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819 28 6.3
11_06_0099 + 20070925-20073867 27 8.4
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075... 27 8.4
08_01_1019 - 10290820-10291393,10293978-10294348 27 8.4
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 27 8.4
07_03_0544 + 19309026-19310105 27 8.4
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 427 GWTRKLKRPRTNGTKVGTKP 486
G++++L RPR+NGT + TKP
Sbjct: 416 GFSQRLTRPRSNGTYLSTKP 435
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 438 PCPTKRPTLVRISRELHTP*PTVTVRSNIRAPLH 337
PCPT VR+S + P PTV V S + AP H
Sbjct: 146 PCPT-----VRVSSAVGAPCPTVRVSSAVGAPCH 174
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 411 PKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
P L + +D+E+ E + G + K DAI EK +EL I K+ VLL
Sbjct: 37 PNLHSNVDREIRQIEQQAYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLL 95
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/70 (35%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = -1
Query: 238 GIKPSLTLPGSPLTGRAKVFWSCVATSEAEPRATSAVHAVCLL--APERKATRDNIIYRI 65
G P T PGS GRA V W A A AV A ER+ R R
Sbjct: 637 GPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAIERR-RRSGWQMRA 695
Query: 64 FYKLFPKCED 35
F K+ CED
Sbjct: 696 FQKVRFGCED 705
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPC 433
PG AP PA P P PP ++ G++LR +L LPC
Sbjct: 111 PG-AAPPPAVGGGPDPSPPRCPPFVALSGAELRG-AGDALALPC 152
>02_05_1081 + 33971950-33972606
Length = 218
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -2
Query: 525 PSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPT--KRPTLVRISRELHTP*PTVTVRSNI 352
P S P P D R+ R ++ PT K P R ++ HT ++S
Sbjct: 112 PVSSPSPAPVAAQAAAVDQRAPRVPAVAQAAPTDQKAPRPARSKQQQHTAAVPTKIKSVA 171
Query: 351 RAPLHRFPCCTGMLPDP 301
AP++ P + P+P
Sbjct: 172 DAPVYAGPAFSSASPEP 188
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 378 PTVTVRSNIRAPLHRFPCCTGMLPDPHQKCKDPSHQFSSGR 256
PT T R PLH F C + DPH PS++ +GR
Sbjct: 437 PTTTALQK-RGPLHIFLC---NVSDPHGNASQPSNRKGTGR 473
>07_03_1257 - 25241194-25242018
Length = 274
Score = 28.3 bits (60), Expect = 4.8
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = -2
Query: 552 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCP-------TKRPTLVRISRE 394
A PA + +PSS P L+P S +++R RSLQ P P T P + SR
Sbjct: 15 AECPATSPSPSSPPPLQPRPRSPRPMP-QAVRHRSLQPPAPDVAGRDSTPSPASMTPSRC 73
Query: 393 LHTP*PTVTVRSNIRAPLHRFP 328
T T T R LH P
Sbjct: 74 RTTLASTTTTRRRPPRRLHSRP 95
>07_01_1113 - 10292781-10293299
Length = 172
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 150 SASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLA 311
S+ D AT + PG +RL + + + H + GP+ G+GL+
Sbjct: 91 SSVDAATKGNPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144
>05_07_0195 -
28331445-28331641,28331841-28331934,28332019-28332099,
28332186-28332234,28332334-28332419,28332513-28332740,
28332819-28332857,28332958-28333047,28333207-28333269,
28333371-28333449,28333539-28333585,28333668-28333730,
28333814-28333864,28333977-28334060,28334162-28334226,
28334559-28334676,28334775-28334825,28335228-28335314,
28335633-28335712,28336676-28336793
Length = 589
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 299 CGSGNIPVQQGNLCNGARILLRTVTVGH 382
CG + PV++GN CNGA + GH
Sbjct: 542 CGVVSSPVRRGNYCNGATKQQKLYQNGH 569
>05_01_0495 -
4136871-4136906,4137043-4137171,4137545-4137694,
4137782-4137847,4138124-4138168,4139022-4139102,
4139202-4139283,4139571-4139642,4140473-4140573,
4140690-4140806,4140929-4141249
Length = 399
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 233 YS*RMVPILPLENWCDGS 286
Y+ RM PI+P+ENW GS
Sbjct: 213 YNPRMDPIIPVENWRKGS 230
>03_06_0711 - 35682293-35682952
Length = 219
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/84 (29%), Positives = 35/84 (41%)
Frame = -2
Query: 552 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP*PT 373
AP+ A A +P SLP P S +D R + L P++ P+ S +P P
Sbjct: 19 APLLASAESPISLPPASAPTASTPAADER-LHPADAAL-APSQPPSEASSSAAALSP-PA 75
Query: 372 VTVRSNIRAPLHRFPCCTGMLPDP 301
S + AP H P P+P
Sbjct: 76 PPETSPLPAPSHSPPVPHSAAPEP 99
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 102 SGASKQTACTALVARGSASDVATHDQKTFAR 194
+ A K AC ALV+RG A+D + + AR
Sbjct: 630 AAAGKLEACRALVSRGGAADAGSETALSVAR 660
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 255 FFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHE 353
+F + V YT GV A YL + E+Y +H+
Sbjct: 47 YFGASIKVPSGYTAGVNTAFYLSNNELYPGQHD 79
>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
Length = 266
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 462 WNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQ 563
W G T A+ E E+T++W A E +Q
Sbjct: 28 WRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQ 61
>11_06_0099 + 20070925-20073867
Length = 980
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 315 YLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNE-GRNQT 485
YLC + ++ + L Y A + GP + WL +V+ N+ G N T
Sbjct: 445 YLCYNHLNIVMDPQWLPPFKLEKSYFASITMGPSFSRWLQSQVDIVALAMNDAGINDT 502
>09_04_0717 +
19706160-19706327,19707036-19707157,19707408-19707510,
19707644-19707734,19707960-19708132,19708534-19708622,
19708995-19709085,19709272-19709361,19709807-19709854,
19710033-19710104,19710181-19710274,19710350-19710494,
19710809-19710951,19711601-19711751,19712276-19712449,
19712799-19712874
Length = 609
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 216 KVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL 377
+ +L FIPE W Q + + Y +G L S ++ E SGL L
Sbjct: 337 ETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGLERL 390
>08_01_1019 - 10290820-10291393,10293978-10294348
Length = 314
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -3
Query: 323 AQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTP 201
A CC+ + +R F +LEP F + W TP
Sbjct: 44 AMACCRAWRDAAASRPALFAALDLEPAFASVGADAAEWWTP 84
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 390 HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQKCKDPSHQFSSG 259
H+P P V N+R L C M P HQ C + H SG
Sbjct: 427 HSPKPNAMVSGNVRELLECPVCLNAMYPPIHQ-CSN-GHTLCSG 468
>07_03_0544 + 19309026-19310105
Length = 359
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 512 GREDGAVARAGTGAPHPGQEGERAP 586
G GA A AG GAP P E R P
Sbjct: 28 GGGGGAAAAAGAGAPDPRAEALRCP 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,685,130
Number of Sequences: 37544
Number of extensions: 402865
Number of successful extensions: 1578
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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