Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14a12
(589 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b... 107 2e-23
BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+ transp... 107 3e-23
BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+ transp... 107 3e-23
AY871272-1|AAX11428.1| 256|Homo sapiens cell proliferation-indu... 107 3e-23
AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+ transp... 107 3e-23
AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+ transp... 107 3e-23
BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+ transp... 104 2e-22
AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+ transp... 69 9e-12
BC037988-1|AAH37988.1| 904|Homo sapiens MICAL-like 2 protein. 34 0.43
AL833704-1|CAD98087.1| 680|Homo sapiens hypothetical protein pr... 34 0.43
AK074068-1|BAB84894.1| 585|Homo sapiens FLJ00139 protein protein. 34 0.43
AK027124-1|BAB15667.1| 704|Homo sapiens protein ( Homo sapiens ... 34 0.43
BC049211-1|AAH49211.1| 414|Homo sapiens PDSS1 protein protein. 33 0.75
AL390961-9|CAI17280.1| 415|Homo sapiens trans-prenyltransferase... 33 0.75
AK223414-1|BAD97134.1| 415|Homo sapiens trans-prenyltransferase... 33 0.75
AB210838-1|BAE48216.1| 415|Homo sapiens subunit 1 of decaprenyl... 33 0.75
BC063635-1|AAH63635.1| 306|Homo sapiens PDSS1 protein protein. 33 0.99
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 32 1.3
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 32 1.3
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 32 1.3
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 32 1.3
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 32 1.3
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 32 1.3
BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein. 31 2.3
BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48 rece... 31 2.3
AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein... 31 2.3
AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48 rece... 31 2.3
AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48 rece... 31 2.3
BC053992-1|AAH53992.1| 1312|Homo sapiens SR-related CTD-associat... 31 3.0
AK024444-1|BAB15734.1| 1343|Homo sapiens FLJ00034 protein protein. 31 3.0
AF254411-1|AAF87552.1| 1312|Homo sapiens ser/arg-rich pre-mRNA s... 31 3.0
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 5.3
AK091779-1|BAC03745.1| 204|Homo sapiens protein ( Homo sapiens ... 25 9.6
>X60221-1|CAA42782.1| 256|Homo sapiens H+-ATP synthase subunit b
protein.
Length = 256
Score = 107 bits (258), Expect = 2e-23
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Frame = +3
Query: 78 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 239
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 240 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 416
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 417 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 176
>BC016350-1|AAH16350.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 107 bits (257), Expect = 3e-23
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Frame = +3
Query: 78 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 239
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 240 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 416
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 417 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 176
>BC005366-1|AAH05366.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 107 bits (257), Expect = 3e-23
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Frame = +3
Query: 78 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 239
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 240 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 416
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 417 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 176
>AY871272-1|AAX11428.1| 256|Homo sapiens cell
proliferation-inducing protein 47 protein.
Length = 256
Score = 107 bits (257), Expect = 3e-23
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Frame = +3
Query: 78 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 239
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 240 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 416
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 417 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 176
>AL390195-7|CAC36042.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 107 bits (257), Expect = 3e-23
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Frame = +3
Query: 78 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 239
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 240 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 416
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 417 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 176
>AK223018-1|BAD96738.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit b
isoform 1 pr protein.
Length = 256
Score = 107 bits (257), Expect = 3e-23
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Frame = +3
Query: 78 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 239
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 240 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 416
EE+FQF + KTGVTGPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 417 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 176
>BC005960-1|AAH05960.1| 256|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 256
Score = 104 bits (250), Expect = 2e-22
Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 7/177 (3%)
Frame = +3
Query: 78 MLSRVALRSGASKQTAC--TALVARGSASDVAT-HDQKTFARPVRGEP---GKVRLGFIP 239
MLSRV L + A+ + A + G T H + PV P GKVR G IP
Sbjct: 1 MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIP 60
Query: 240 EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPK 416
EE+FQF + KTGVTGPY G GL Y SK IYV+ E ++ LS+L VMVY K+GP
Sbjct: 61 EEFFQFLYPKTGVTGPYVLGTGLILYALSKGIYVISAETFTALSVLGVMVY-GIKKYGPF 119
Query: 417 LAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
+A + DK E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 120 VADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 176
>AL390195-8|CAI15628.1| 195|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit B1
protein.
Length = 195
Score = 69.3 bits (162), Expect = 9e-12
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +3
Query: 264 SKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLL-VMVYVAHVKFGPKLAAWLDKE 440
S GPY G GL Y SKEIYV+ E ++ LS+L VMVY K+GP +A + DK
Sbjct: 8 SAAATAGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVY-GIKKYGPFVADFADKL 66
Query: 441 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 587
E + E + +++ +++AI+ EK++Q Q + L ++ N+ +
Sbjct: 67 NEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAM 115
>BC037988-1|AAH37988.1| 904|Homo sapiens MICAL-like 2 protein.
Length = 904
Score = 33.9 bits (74), Expect = 0.43
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRP 418
P G P PA A PSS P+ P S L+S R L LP + P
Sbjct: 469 PAPGRPSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPP 517
>AL833704-1|CAD98087.1| 680|Homo sapiens hypothetical protein
protein.
Length = 680
Score = 33.9 bits (74), Expect = 0.43
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRP 418
P G P PA A PSS P+ P S L+S R L LP + P
Sbjct: 427 PAPGRPSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPP 475
>AK074068-1|BAB84894.1| 585|Homo sapiens FLJ00139 protein protein.
Length = 585
Score = 33.9 bits (74), Expect = 0.43
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRP 418
P G P PA A PSS P+ P S L+S R L LP + P
Sbjct: 482 PAPGRPSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPP 530
>AK027124-1|BAB15667.1| 704|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23471 fis, clone HSI11969. ).
Length = 704
Score = 33.9 bits (74), Expect = 0.43
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRP 418
P G P PA A PSS P+ P S L+S R L LP + P
Sbjct: 269 PAPGRPSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPP 317
>BC049211-1|AAH49211.1| 414|Homo sapiens PDSS1 protein protein.
Length = 414
Score = 33.1 bits (72), Expect = 0.75
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHT 385
PG G+P A PS+ ++R V R G DL I +L + P + RISR HT
Sbjct: 20 PGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINLVKHLTSACPNVCRISRFHHT 79
>AL390961-9|CAI17280.1| 415|Homo sapiens trans-prenyltransferase
(TPT) protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.75
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHT 385
PG G+P A PS+ ++R V R G DL I +L + P + RISR HT
Sbjct: 21 PGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINLVKHLTSACPNVCRISRFHHT 80
>AK223414-1|BAD97134.1| 415|Homo sapiens trans-prenyltransferase
variant protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.75
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHT 385
PG G+P A PS+ ++R V R G DL I +L + P + RISR HT
Sbjct: 21 PGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINLVKHLTSACPNVCRISRFHHT 80
>AB210838-1|BAE48216.1| 415|Homo sapiens subunit 1 of decaprenyl
diphosphate synthase protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.75
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHT 385
PG G+P A PS+ ++R V R G DL I +L + P + RISR HT
Sbjct: 21 PGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINLVKHLTSACPNVCRISRFHHT 80
>BC063635-1|AAH63635.1| 306|Homo sapiens PDSS1 protein protein.
Length = 306
Score = 32.7 bits (71), Expect = 0.99
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = -2
Query: 564 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHT 385
PG G+P A PS+ ++R V R G DL I +L + P + RISR HT
Sbjct: 21 PGPGSPGRAVPLGPSAAAEVRAQVHRRKGLDLSQIPYINLVKHLTSACPNVCRISRFHHT 80
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 468 RSIRSRSLQLPCPTKRPTLVRISREL-HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQK 292
RS R R + P P +R + VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 291 CKDPSHQ 271
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 468 RSIRSRSLQLPCPTKRPTLVRISREL-HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQK 292
RS R R + P P +R + VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 291 CKDPSHQ 271
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 468 RSIRSRSLQLPCPTKRPTLVRISREL-HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQK 292
RS R R + P P +R + VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 291 CKDPSHQ 271
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 468 RSIRSRSLQLPCPTKRPTLVRISREL-HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQK 292
RS R R + P P +R + VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 291 CKDPSHQ 271
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 468 RSIRSRSLQLPCPTKRPTLVRISREL-HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQK 292
RS R R + P P +R + VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 291 CKDPSHQ 271
K+PS Q
Sbjct: 230 VKEPSVQ 236
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 32.3 bits (70), Expect = 1.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 468 RSIRSRSLQLPCPTKRPTLVRISREL-HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQK 292
RS R R + P P +R + VR R+ H+ P +S +P T LP+P K
Sbjct: 170 RSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVK 229
Query: 291 CKDPSHQ 271
K+PS Q
Sbjct: 230 VKEPSVQ 236
>BC119788-1|AAI19789.1| 626|Homo sapiens APOB48R protein protein.
Length = 626
Score = 31.5 bits (68), Expect = 2.3
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +3
Query: 207 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 386
E + G + EW HS T GP G +E E E L+L
Sbjct: 67 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 126
Query: 387 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 551
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 127 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 186
Query: 552 LLIQAK 569
L +A+
Sbjct: 187 LAAEAE 192
>BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 31.5 bits (68), Expect = 2.3
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +3
Query: 207 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 386
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 387 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 551
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 552 LLIQAK 569
L +A+
Sbjct: 649 LAAEAE 654
>AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein
B48 receptor type 2 protein.
Length = 1076
Score = 31.5 bits (68), Expect = 2.3
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +3
Query: 207 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 386
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 387 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 551
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 552 LLIQAK 569
L +A+
Sbjct: 649 LAAEAE 654
>AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 31.5 bits (68), Expect = 2.3
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +3
Query: 207 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 386
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 387 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 551
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 552 LLIQAK 569
L +A+
Sbjct: 649 LAAEAE 654
>AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48
receptor protein.
Length = 1088
Score = 31.5 bits (68), Expect = 2.3
Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +3
Query: 207 EPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMV 386
E + G + EW HS T GP G +E E E L+L
Sbjct: 529 EAAQTSCGLLGVEWGGLTHSVTKGQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEE 588
Query: 387 YVAHVKFGPKLAAWLDKEV-EATENEWNEGRNQTVK---ALEDAIEGE-KTEQWRAQGQE 551
++ GP+ A + E EA W + ++ EDA +GE + E+ A GQ
Sbjct: 589 QERSLEAGPRHAGSVKPEASEAFPGAWENRTRKDMERGNTQEDAADGEQREEEETAGGQT 648
Query: 552 LLIQAK 569
L +A+
Sbjct: 649 LAAEAE 654
>BC053992-1|AAH53992.1| 1312|Homo sapiens SR-related CTD-associated
factor 1 protein.
Length = 1312
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -2
Query: 543 PARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP 382
P + +APSS P +PPV S GS S S ++ +K L+R TP
Sbjct: 797 PPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTP 850
>AK024444-1|BAB15734.1| 1343|Homo sapiens FLJ00034 protein protein.
Length = 1343
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -2
Query: 543 PARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP 382
P + +APSS P +PPV S GS S S ++ +K L+R TP
Sbjct: 828 PPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTP 881
>AF254411-1|AAF87552.1| 1312|Homo sapiens ser/arg-rich pre-mRNA
splicing factor SR-A1 protein.
Length = 1312
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -2
Query: 543 PARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP 382
P + +APSS P +PPV S GS S S ++ +K L+R TP
Sbjct: 797 PPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTP 850
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 5.3
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -2
Query: 465 SIRSRSLQLPCPTKRPTLVRISREL-HTP*PTVTVRSNIRAPLHRFPCCTGMLPDPHQKC 289
S R R + P P +R + VR R+ H+ P +S +P T LP+P K
Sbjct: 171 SPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKV 230
Query: 288 KDPSHQ 271
K+PS Q
Sbjct: 231 KEPSVQ 236
>AK091779-1|BAC03745.1| 204|Homo sapiens protein ( Homo sapiens
cDNA FLJ34460 fis, clone HLUNG2002942. ).
Length = 204
Score = 25.4 bits (53), Expect(2) = 9.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 479 PNRESTGGRN*GREDGAVARAGTGAPH 559
P + GGR G+E A R G +PH
Sbjct: 60 PGQPRQGGRGKGQEASAQTRYGGNSPH 86
Score = 22.6 bits (46), Expect(2) = 9.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 533 ARAGTGAPHPGQ 568
AR G PHPGQ
Sbjct: 105 ARRARGCPHPGQ 116
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,187,283
Number of Sequences: 237096
Number of extensions: 2206364
Number of successful extensions: 13452
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 12997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13444
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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