Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc14a12
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    52   3e-07
Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    27   7.5  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    27   7.5  
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    27   7.5  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    27   7.5  
AJ871144-1|CAI38753.2|  476|Caenorhabditis elegans UDP-galactopy...    27   9.9  
AF125442-8|AAD12787.2|  476|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lecti...    27   9.9  

>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/79 (32%), Positives = 42/79 (53%)
 Frame = +3

Query: 210 PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVY 389
           P K RL  +P+ WF  F   TG +GPY F  GL  +L +KE++V E + +  +  ++   
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYL 161

Query: 390 VAHVKFGPKLAAWLDKEVE 446
           +     G K+ A L K+ +
Sbjct: 162 LVSRTAGYKIDAGLYKDYQ 180


>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 36/112 (32%), Positives = 59/112 (52%)
 Frame = +3

Query: 189 ARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGL 368
           ARP+   P K RL  +P+ WF  F   TGV+GPY F  GL  +L +KE++V E + +  +
Sbjct: 99  ARPMY--PPKSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQGHMTV 156

Query: 369 SLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKT 524
             ++   +     G K+   L    +   N + +G  Q  + L++A+E +KT
Sbjct: 157 GWILFYLLVTRTAGYKIDQGLYNGYQERVN-FFKGLIQ--EDLKEAVEFKKT 205


>Z75552-4|CAA99942.1|  624|Caenorhabditis elegans Hypothetical
           protein W04D2.4 protein.
          Length = 624

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -2

Query: 540 ARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP*PTVTVR 361
           +R   P S+      ++ + G +   +  RS       ++PT   I+ + H P P V V 
Sbjct: 264 SREGIPKSIEVWEEELIDKVGIEWPPVSMRSPHRFTEPRKPTTTEIAIQEHWPRPRVFVG 323

Query: 360 SNIRAPLHRFP 328
            N R  L  FP
Sbjct: 324 KNRRDHLMAFP 334


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 27/84 (32%), Positives = 33/84 (39%)
 Frame = -2

Query: 579 RSPSWPG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRIS 400
           RSPS     +P P R  +PS  PQ      S  GS  RS R R      P +R +  R  
Sbjct: 441 RSPSQSK--SPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRR 498

Query: 399 RELHTP*PTVTVRSNIRAPLHRFP 328
                  P+ + RS    P  R P
Sbjct: 499 SPRRRRSPSSSSRSRSPPPPPRRP 522


>Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 329 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 183
           LAA+ C  T   +V+       V E E   ++  K+   WL+P   SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350


>Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 329 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 183
           LAA+ C  T   +V+       V E E   ++  K+   WL+P   SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 435 KEVEATENEWNEGRNQTVKALEDA-IEGEKT----EQWRAQGQELLIQAKK 572
           KE+EA   +W +   +  K L +  +E  +T    E+W+ + QE+ IQ K+
Sbjct: 250 KEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQ 300


>U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical
           protein C24B5.2a protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 549 PVPARATAPSSLPQLRPPV 493
           P P RATAP+SLP  + PV
Sbjct: 130 PRPTRATAPASLPMHQNPV 148


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/95 (25%), Positives = 32/95 (33%)
 Frame = -2

Query: 585 GARSPSWPG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVR 406
           GA S + P    P P    +    P   PP   +  SD    R+     P    +PT+ R
Sbjct: 149 GATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKPSSDREQFRTMRPLRPANDVKPTMYR 208

Query: 405 ISRELHTP*PTVTVRSNIRAPLHRFPCCTGMLPDP 301
            S       P  T  + +  PL   P      P P
Sbjct: 209 RSGSSEDI-PQATSATRLARPLAPPPARPAAPPPP 242


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
 Frame = +3

Query: 240  EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEY--YSGLSLLVMVYVAHVKFGP 413
            EEW  F        G YT+   L TY   KE   ++  Y  +S +   ++      KF  
Sbjct: 1314 EEWDSFQFCSKQHWGIYTWPAKLITYAPLKEQTAIDRSYEQFSEVEKYIVDMFQDEKFMT 1373

Query: 414  KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKE 575
            +L      E++  +  +N       + L        T  +R Q  E+L+ + KE
Sbjct: 1374 RLRELFSIEMKKEDEVFNAVHFSLFQGLFRCYGDVLTHAFRTQ-LEILLASSKE 1426


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 576 SPSWPG*GAPVPARATAPSSLPQL-RPPVLSRFG 478
           S  WP    P P R   P  +P +  PP  SRFG
Sbjct: 293 SGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 326


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 576 SPSWPG*GAPVPARATAPSSLPQL-RPPVLSRFG 478
           S  WP    P P R   P  +P +  PP  SRFG
Sbjct: 303 SGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 336


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = -2

Query: 543 PARATAPSSLPQLRPPV-LSRFGSDLRSIR----SRSLQLPC-PTKRPTLVRISRELHTP 382
           P     P + P  RPP  +  +G +   I+    + + Q+   PT++PTL+ +S   H  
Sbjct: 414 PTTQAPPITPPPYRPPTSVVTYGPESEEIQHAEHAENGQISAIPTRKPTLIEVSPSTHHH 473

Query: 381 *PTVTVRSN 355
              V + SN
Sbjct: 474 HGIVNLESN 482


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 227 WLYS*RMVPILPLENWCDGSLHFWC 301
           W Y    V ++ L NWC    H WC
Sbjct: 95  WFYLHSKVHLISLANWCSSVAH-WC 118


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = -2

Query: 540 ARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP*PTVT 367
           A   +P   P   P     FG    +     L+ P P  RP   R S  L+TP   +T
Sbjct: 444 ATRRSPPKGPSAPPAYTLPFGGSTPNHEPMDLEDPVPPPRPDRPRASTPLNTPVSQIT 501


>AJ871144-1|CAI38753.2|  476|Caenorhabditis elegans
           UDP-galactopyranose mutase protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = +3

Query: 84  SRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGF---IPEEWFQ 254
           SRVA       +  C+   A  + +D        F  P  G  G V       +P EWF+
Sbjct: 186 SRVAKLPQEKLEELCSMDQAELANADFGWGPNSYFTFPTYGGTGNVWNSMAKKLPNEWFK 245

Query: 255 FFHSKTGV 278
           F +  TGV
Sbjct: 246 FNNKVTGV 253


>AF125442-8|AAD12787.2|  476|Caenorhabditis elegans Hypothetical
           protein H04M03.4 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = +3

Query: 84  SRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGF---IPEEWFQ 254
           SRVA       +  C+   A  + +D        F  P  G  G V       +P EWF+
Sbjct: 186 SRVAKLPQEKLEELCSMDQAELANADFGWGPNSYFTFPTYGGTGNVWNSMAKKLPNEWFK 245

Query: 255 FFHSKTGV 278
           F +  TGV
Sbjct: 246 FNNKVTGV 253


>AC024817-29|AAK68530.1|  280|Caenorhabditis elegans C-type lectin
           protein 85 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 338 IDFLAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRAS 189
           + F  AQ  C +  +++   HTS +   L    R +  S   W+   RAS
Sbjct: 38  LKFTDAQSACYSQNQNLAVIHTSLQANFLASIVRTQTGSQKFWIGLSRAS 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,903
Number of Sequences: 27780
Number of extensions: 320093
Number of successful extensions: 1025
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)