Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14a05
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 219 3e-58
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 218 4e-58
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 209 2e-55
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.64
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.0
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 3.4
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 3.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.5
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 6.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 6.0
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 7.9
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 219 bits (534), Expect = 3e-58
Identities = 103/177 (58%), Positives = 126/177 (71%)
Frame = +2
Query: 41 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 220
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 221 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 400
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 401 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDA 571
LKPGR YC VGRLS E+GWKY D+V KLE++RK K+ Y+ KL + K A
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIA 180
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 218 bits (533), Expect = 4e-58
Identities = 103/177 (58%), Positives = 126/177 (71%)
Frame = +2
Query: 41 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 220
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 221 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 400
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 401 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDA 571
LKPGR YC VGRLS E+GWKY D+V KLE++RK K+ Y+ KL + K A
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIA 180
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 209 bits (511), Expect = 2e-55
Identities = 92/160 (57%), Positives = 118/160 (73%)
Frame = +2
Query: 41 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 220
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 221 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 400
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 401 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 520
LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.64
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 68 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 172
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 446 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
R S E K D K E+KR+ K K+ EKK K+ K+
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKE 468
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -1
Query: 151 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 14
D+ A N + L RQ QQM T +YGL+ KAR N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 333 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 247
S L AFLP+ LC +IPL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 354 GHPSYVRSLLRAFLPRSVLCGIIP 283
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 509 KGKAVKRVAYEKKLKRITKDAGE 577
KGK V R+ Y+ K + D+GE
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGE 562
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 252 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLAMTA 88
AL+ G ++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 176 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 292
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,889
Number of Sequences: 5004
Number of extensions: 47511
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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