Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14a05
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 223 5e-59
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 223 5e-59
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 30 1.4
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.4
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 29 3.1
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 7.2
Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 223 bits (546), Expect = 5e-59
Identities = 103/181 (56%), Positives = 131/181 (72%)
Frame = +2
Query: 29 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 388
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K +KK+ ++
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180
Query: 569 A 571
A
Sbjct: 181 A 181
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 223 bits (546), Expect = 5e-59
Identities = 103/181 (56%), Positives = 131/181 (72%)
Frame = +2
Query: 29 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 388
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K +KK+ ++
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180
Query: 569 A 571
A
Sbjct: 181 A 181
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 536 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 426
R+ S C S L +E HHGI + G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 518 PCPSSCLQAYEQHHGISIQFHGTVCLHD 435
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -3
Query: 482 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 315
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -3
Query: 494 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 321
A+ HHG HG H S ++G + H H G+ G HH + S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594
Query: 320 HSCHA 306
H HA
Sbjct: 595 HGHHA 599
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 428 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKD 568
+YC G+ S H I WKYRD V ++ K K A++ R A E K I D
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHD 331
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 493 LTNNITVFPSNFMGQSAYMTVITARFQTE 407
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
>Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical
protein F25D1.5 protein.
Length = 277
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 23 MTGFSNKAIVIDGRGHLLGRLAAVI 97
M FS K+++I G + +GR AAVI
Sbjct: 1 MARFSGKSVIITGSSNGIGRSAAVI 25
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,288,674
Number of Sequences: 27780
Number of extensions: 279849
Number of successful extensions: 724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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