Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc14a01
(561 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical ... 29 2.3
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 29 3.0
U23169-7|AAL02449.1| 512|Caenorhabditis elegans Arginyl aa-trna... 29 3.0
Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 27 9.2
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 27 9.2
>AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical
protein Y48G9A.9a protein.
Length = 352
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 286 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 441
N N++ E P+ QSS E+D++ R V+ LNN +A ++ G L++ Y
Sbjct: 17 NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
TNA LN++T ++ S SSES S + + K + A+ ++ H + + + Y +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 454 PL 459
P+
Sbjct: 223 PI 224
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
TNA LN++T ++ S SSES S + + K + A+ ++ H + + + Y +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 454 PL 459
P+
Sbjct: 223 PI 224
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
TNA LN++T ++ S SSES S + + K + A+ ++ H + + + Y +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 454 PL 459
P+
Sbjct: 223 PI 224
>U23169-7|AAL02449.1| 512|Caenorhabditis elegans Arginyl aa-trna
synthetase protein2 protein.
Length = 512
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 62 EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 184
E+F ++E F K V NW+ND +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171
>Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical
protein C47E8.3 protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 470 SSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLFSSDSTDSL 330
SS++ GF +Y +LN ++S + R + F NRL + S D+L
Sbjct: 294 SSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLIHTASVDTL 341
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
C49C3.4 protein.
Length = 1566
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -2
Query: 479 WTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKL-GDAS 303
WT ++I S + L+P +T A L FT SSD T +LL G+ S
Sbjct: 920 WTPNAIHRSASYVNAKSEPLTPVNKITESTGAALKFTLENQCSSDKTATLLITDCNGEVS 979
Query: 302 VK 297
K
Sbjct: 980 AK 981
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -2
Query: 365 NRLFSSDSTDSLLCPKLGDASVKE---FKFNAFV 273
N +FSS T L C KLG+ S ++ F F A V
Sbjct: 395 NTVFSSSITGQLFCLKLGETSEQDSTSFNFAALV 428
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 241 SITRFST*FVLIYNFNSNEI*VVQMF 164
S+ FST ++LIYNF +N + ++ F
Sbjct: 19 SLCLFSTMYILIYNFTTNVLKAMRYF 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,606,335
Number of Sequences: 27780
Number of extensions: 249867
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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