Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13p24
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    64   1e-11
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     29   0.57 
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   4.0  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   9.3  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
 Frame = +2

Query: 293 KMNMMQAINNAMDITLKNDPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQX 469
           +M +  A+N+AM+  +K D    L GE+VA + G ++ + GL +K+G  RV +TP+ E  
Sbjct: 37  EMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMG 96

Query: 470 XXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGG 604
                            E    ++   A D IVN AA+  Y SGG
Sbjct: 97  FTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGG 141


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 182 FLYLNLSFLTSRNPTIVELGNKLLSTNVINF 90
           ++ L  SFLT   P++V LG  ++S  ++NF
Sbjct: 159 YVLLGFSFLTGGLPSLVVLGFGIISAMIVNF 189


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 459 HSGVLKTRSLPYFSCNPKAHLKTPPNATSSPNNTAVGS 346
           +S VL   ++PY SC P     TP +A+S  + T   S
Sbjct: 147 NSTVLTFTAVPYDSCLPAPDRHTPSSASSRASETGTTS 184


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 441 TRSLPYFSCNPKAHLKTPPNATSSPNNTA 355
           T SLP  + N        PN  S+PNNTA
Sbjct: 123 TPSLPQSATNISFDSSAIPNVQSNPNNTA 151


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 429 PYFSCNPKAHLKTPPNATSSPNN 361
           P  SC PK  LK PP   SS  N
Sbjct: 192 PPISCLPKDLLKAPPADPSSKEN 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,581
Number of Sequences: 5004
Number of extensions: 50358
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)