Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13p24
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 125 3e-29
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 70 2e-12
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 69 2e-12
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 60 1e-09
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 60 1e-09
11_03_0179 + 11290595-11290814,11290886-11291382 31 0.59
01_01_0867 - 6773411-6774682,6775008-6775643 31 0.78
05_05_0100 + 22388457-22388561,22388657-22388808,22388897-223892... 29 3.2
05_05_0099 - 22381586-22382604,22382683-22383056,22383145-223832... 29 3.2
01_01_0868 - 6780919-6783207 28 7.3
06_01_0666 - 4873797-4874057,4874327-4874455 27 9.7
05_01_0399 - 3154179-3154313,3154834-3154926,3155173-3155285,315... 27 9.7
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 125 bits (301), Expect = 3e-29
Identities = 67/141 (47%), Positives = 82/141 (58%), Gaps = 21/141 (14%)
Frame = +2
Query: 281 GETTKMNMMQAINNAMDITLKNDPTAVLFGEDVAFGGVFRCALGLQEKYGKDRVFNTPLC 460
G ++N+ AIN A+ I L DP + +FGEDV FGGVFRC GL +++G++RVFNTPLC
Sbjct: 45 GAGKEVNLFTAINQALHIALDTDPRSYVFGEDVGFGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 461 EQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFD---------------------QIVNEA 577
EQ EIQFADYIFPAFD QIVNEA
Sbjct: 105 EQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQACLRLDQCFVPTYLYIQLLVQIVNEA 164
Query: 578 AKARYRSGGEYDSGALTVRAP 640
AK RYRSG E++ G LT+R+P
Sbjct: 165 AKFRYRSGNEFNCGGLTIRSP 185
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 69.7 bits (163), Expect = 2e-12
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +2
Query: 260 DKERPVDGETTKMNMMQAINNAMDITLKNDPTAVLFGEDVA-FGGVFRCALGLQEKYGKD 436
D R +M + +A+N+A+D + DP+ L GE+V + G ++ + GL +KYG +
Sbjct: 31 DAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPE 90
Query: 437 RVFNTPLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDS 616
RV +TP+ E E ++ A D I+N AAK+ Y S G+ S
Sbjct: 91 RVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQI-S 149
Query: 617 GALTVRAP 640
+ R P
Sbjct: 150 VPIVFRGP 157
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +2
Query: 269 RPVDGETTKMNMMQAINNAMDITLKNDPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVF 445
R +M + +A+N+A+D + DP+ L GE+V + G ++ + GL +KYG DRV
Sbjct: 14 RTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVL 73
Query: 446 NTPLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGE 607
+TP+ E E ++ A D I+N AAK+ Y S G+
Sbjct: 74 DTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQ 127
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +2
Query: 302 MMQAINNAMDITLKNDPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQXXXX 478
+ +A+ A+ +K DPT +FGEDV +GG ++ GL E +G RV +TP+ E
Sbjct: 58 LFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFAG 117
Query: 479 XXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAP 640
E ++ A++QI N Y SGG++ + +R P
Sbjct: 118 MGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKI-PIVIRGP 170
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +2
Query: 302 MMQAINNAMDITLKNDPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQXXXX 478
+ +A+ A+ +K DPT +FGEDV +GG ++ GL E +G RV +TP+ E
Sbjct: 75 LFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSFTG 134
Query: 479 XXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGGEYDSGALTVRAP 640
E ++ A++QI N Y SGG++ + +R P
Sbjct: 135 MGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKI-PIVIRGP 187
>11_03_0179 + 11290595-11290814,11290886-11291382
Length = 238
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 125 PIQQSLDFVTLKMTSLSTKSIVFHKLIRNVNNYAKRMSSHFIYYPD 262
P+QQS+D K+T +T S+ KL + N A R S + +Y D
Sbjct: 155 PLQQSMDAFMEKVTETTTGSVTL-KLYKGSVNIASRKSPYILYGED 199
>01_01_0867 - 6773411-6774682,6775008-6775643
Length = 635
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 194 GTQYFLYLNLSFLTSRNPTIVELGNKLLSTNVINFAL 84
GT+++L + +TS NP LGN++ TN +N L
Sbjct: 49 GTKHYLGIRYKNITSSNPVNFWLGNRIPITNFLNATL 85
>05_05_0100 +
22388457-22388561,22388657-22388808,22388897-22389270,
22389349-22390367
Length = 549
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 435 SLPYFSCNPKAHLKTPPNATSSPNNTAV 352
+ PY+ NP + TPPN T+ N T V
Sbjct: 424 NFPYYPLNPFNYTGTPPNNTNVMNGTKV 451
>05_05_0099 -
22381586-22382604,22382683-22383056,22383145-22383296,
22383392-22383496
Length = 549
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 435 SLPYFSCNPKAHLKTPPNATSSPNNTAV 352
+ PY+ NP + TPPN T+ N T V
Sbjct: 424 NFPYYPLNPFNYTGTPPNNTNVMNGTKV 451
>01_01_0868 - 6780919-6783207
Length = 762
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 194 GTQYFLYLNLSFLTSRNPTIVELGNKLLSTNVINFAL 84
GT+++L + ++S NP LGN++ T IN L
Sbjct: 64 GTKHYLGIRYKNMSSNNPITFWLGNRIPITYFINATL 100
>06_01_0666 - 4873797-4874057,4874327-4874455
Length = 129
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 542 IFPAFDQIVNEAAKARYRSGGE--YDSGALTVRAPC 643
+ P F +++ + K R RS GE Y G LT+ PC
Sbjct: 73 VMPVFRRLLEKGRK-RSRSSGEFEYSDGELTMSIPC 107
>05_01_0399 -
3154179-3154313,3154834-3154926,3155173-3155285,
3155684-3155780
Length = 145
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 113 AAYYPIQQSLDFVTLKMTSLSTKSIVFHKLIRNVNNYAKRMSSHFIYYPDKERPVDGETT 292
AA P + + + + S+ I + R+ AK++ S+FI ++RP E
Sbjct: 9 AALLPCLPARELQAVDRSLQSSHQIDVERHARDFMEAAKKLQSYFISLQREDRPSTEEML 68
Query: 293 KMNMMQAIN 319
+ N+ + +N
Sbjct: 69 RKNLDEKLN 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,471
Number of Sequences: 37544
Number of extensions: 289654
Number of successful extensions: 661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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