Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13p24
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical pr... 163 1e-40
AF038606-5|AAB92024.2| 352|Caenorhabditis elegans Hypothetical ... 64 8e-11
U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized mu... 28 4.9
AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L) prot... 28 4.9
AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical ... 28 4.9
Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z50741-4|CAO82050.1| 190|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear recep... 28 6.5
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z79695-1|CAB01970.1| 366|Caenorhabditis elegans Hypothetical
protein F27D4.5 protein.
Length = 366
Score = 163 bits (395), Expect = 1e-40
Identities = 79/138 (57%), Positives = 95/138 (68%), Gaps = 3/138 (2%)
Frame = +2
Query: 230 RMSSHFIYYPDKERPV---DGETTKMNMMQAINNAMDITLKNDPTAVLFGEDVAFGGVFR 400
R +HF + P P + E TKMN+MQ++N AM I ++ D +AVLFGEDVAFGGVFR
Sbjct: 20 RGKAHFTFQPSTTLPAGLENLEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVAFGGVFR 79
Query: 401 CALGLQEKYGKDRVFNTPLCEQXXXXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAA 580
C+L LQ+K+GKDRVFNTPLCEQ EIQF DYIFPA+DQ+VNEAA
Sbjct: 80 CSLDLQKKFGKDRVFNTPLCEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAA 139
Query: 581 KARYRSGGEYDSGALTVR 634
K RYRSG ++D G LTVR
Sbjct: 140 KFRYRSGNQFDCGKLTVR 157
>AF038606-5|AAB92024.2| 352|Caenorhabditis elegans Hypothetical
protein C04C3.3 protein.
Length = 352
Score = 64.1 bits (149), Expect = 8e-11
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +2
Query: 296 MNMMQAINNAMDITLKNDPTAVLFGEDVA-FGGVFRCALGLQEKYGKDRVFNTPLCEQXX 472
M + A+N AMD +K D L GE+VA + G ++ + GL +K+G RV +TP+ E
Sbjct: 25 MTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGF 84
Query: 473 XXXXXXXXXXXXXXXXEIQFADYIFPAFDQIVNEAAKARYRSGG 604
E ++ A DQI+N AAK Y S G
Sbjct: 85 AGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAG 128
>U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized
muscle protein 1,isoform a protein.
Length = 640
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 212 VNNYAKRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLKNDPTAVL 364
+NN+ K S YP P+ GE T + + N ++ ++ PT +
Sbjct: 25 INNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYNNQNLCTRSKPTTFI 75
>AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L)
protein.
Length = 640
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 212 VNNYAKRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLKNDPTAVL 364
+NN+ K S YP P+ GE T + + N ++ ++ PT +
Sbjct: 25 INNHFKCTSKDLNEYPRTSTPLPGEITSIYSLPRSYNNQNLCTRSKPTTFI 75
>AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical
protein K07H8.11 protein.
Length = 302
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 173 STKSIVFHKLIRNVNNYAKRMSSHFIYYPDK-ERPVDG 283
S S+++++L+R K++ F YYP++ E+ +DG
Sbjct: 141 SYDSLLYNELLRLSTGIPKQLKISFFYYPERTEKVLDG 178
>Z83233-2|CAB05761.1| 338|Caenorhabditis elegans Hypothetical
protein K06B4.2 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 110 IAAYYPIQQSLDFVTLKMTSLSTKSIVFHKLIRNVNNYAKRMSSH 244
+ +YY I Q LDF +K SL+ + I+F + + ++ M ++
Sbjct: 146 LGSYYKIAQFLDFDFVKTMSLADRKILFSYNTLRMGSLSRSMRTY 190
>Z50741-4|CAO82050.1| 190|Caenorhabditis elegans Hypothetical
protein F55G7.4 protein.
Length = 190
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 227 KRMSSHFIYYPDKERPVDGETTKMNMMQAINNAMDITLK 343
+R+ +H++ YP D + TK++ ++ N+A D++LK
Sbjct: 53 ERLINHYVSYPSPVHGSDVDETKVD-LKIKNHAFDLSLK 90
>AF273797-2|AAG15146.1| 338|Caenorhabditis elegans nuclear receptor
NHR-52 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 110 IAAYYPIQQSLDFVTLKMTSLSTKSIVFHKLIRNVNNYAKRMSSH 244
+ +YY I Q LDF +K SL+ + I+F + + ++ M ++
Sbjct: 146 LGSYYKIAQFLDFDFVKTMSLADRKILFSYNTLRMGSLSRSMRTY 190
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 551 AFDQIVNEAAKARYRSGGEYDSGALTVRAPCS 646
A+D +V++ KA YR+GG +S + APCS
Sbjct: 151 AYDLVVDQIHKAAYRNGGLGNS----IYAPCS 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,454
Number of Sequences: 27780
Number of extensions: 285334
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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