Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13p11
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 29 0.64
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.64
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 27 1.5
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 27 1.5
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 27 1.5
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 26 4.5
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 26 4.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.5
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 4.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.0
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 25 7.9
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 7.9
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.7 bits (61), Expect = 0.64
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = -1
Query: 536 YLXVCAAINSPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGACQSAHT 357
YL + N K V P+ + R + AP + K GVC++I T C S +
Sbjct: 380 YLSIARESADDFANITKAVDPSLFESCIRVQNAP--SLIKCGVCLIISSTTPSFCASVNL 437
Query: 356 VGT-NPSATSIIIGTPSITYTFTMSPEDNTNFMQM 255
+ + S S++ ++ + ++ + NF ++
Sbjct: 438 LNADDKSQESLMQLFTTMAHILVVTTRERINFPEL 472
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.64
Identities = 24/91 (26%), Positives = 36/91 (39%)
Frame = -1
Query: 482 VPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGACQSAHTVGTNPSATSIIIGTPSIT 303
+PP G+ST PP + T T S S+ + T+ S T+ P+
Sbjct: 345 IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGN 404
Query: 302 YTFTMSPEDNTNFMQMPIDLAGTSCFTFSSV 210
T ++P P L T+C T +SV
Sbjct: 405 STTPVTPTVPPTSSSTP--LTTTNCTTSTSV 433
Score = 25.4 bits (53), Expect = 6.0
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Frame = -1
Query: 482 VPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGACQSAHTVGTNPSATSII----IGT 315
+PP G+ST PP + T T S S+ T+ S T+ G
Sbjct: 291 IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGN 350
Query: 314 PSITYTFTMSPEDNTNFMQMPIDLAGTSCFTFSSVIVGNS 195
+ T T+ P ++ P + +S T SS ++ S
Sbjct: 351 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTS 390
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 356 RCARSGKLLKWSHISLYIHRSFQRSKVELLYTSQE*NYQQEVQ 484
RCA SG L+K S + ++ R+FQ K +TS E Y ++++
Sbjct: 11 RCASSGHLMKESLVFIHQTRTFQVGK----FTSNE-KYNEKIE 48
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 330 HYNWH-PVYHVHIYNVSRGQHQFHANAYRFGGYQLLHFLFSYCRKLMNDPL 181
+Y+W PV+H + YN+ + + Y +GG + L C+K M DPL
Sbjct: 115 NYSWFMPVFHSYPYNIQKFDAARYFILYHYGGVYM--DLDIGCKKPM-DPL 162
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 118 AKPYKLKSNNTLKNSEKKQLAQRIIHEFPT-ITEEKVKQLVPAKSIGICMKLVLSSG 285
AKP + + + LK+ ++ ++ I+ PT +TE +VK+L KSIG C ++ L+ G
Sbjct: 37 AKP-AVNTASALKSVISEE-SKIIVSNLPTDVTEAQVKELF-VKSIGPCKRVSLAYG 90
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 434 PWTFGKTGVCIMICGTISGACQSA 363
PWT TG+CI+ +S Q A
Sbjct: 138 PWTETSTGICILQATVLSSLAQYA 161
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 321 WHPVYHVHIYNVSR 280
W YHVH+Y+ SR
Sbjct: 395 WRDEYHVHLYSASR 408
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.5
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = -1
Query: 506 PLQNCGKPVPPAGS-STPGRYRGAPPWTFGKTGVCIMICGTISGACQSAHTVGTNPSATS 330
P + G V G+ +T G TF T + I TI S T G NP+A
Sbjct: 787 PTTSTGSSVTSTGTGTTTGVTEVTETSTFETTEI---ITSTIEPTTASG-TGGGNPTAAP 842
Query: 329 IIIGTPSITYTFTMSPEDNTNFMQMPIDLAGTSCFTFSSVIVGNS*MILCAN 174
P++T T T + E + + P TS F+F++ I+G + I+ N
Sbjct: 843 T--NEPTVT-TGTETTEGTATYTE-PTTF--TSTFSFTTTIIGGTTTIIPVN 888
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 136 KSNNTLKNSEKKQLAQRIIHEFPTITEEK 222
KS LKN ++Q+ +R IHE ++ + +
Sbjct: 90 KSAEELKNKIREQIQERDIHEIDSLVQSR 118
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 6.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -1
Query: 164 SEFFNVLLDFNLYGFANISIFR*DIKLWNICEFPWKFLGLVYFRGVQTVLDCDE 3
SE FNVL +NL+ S+ + CEFPW F G L+ +E
Sbjct: 3655 SELFNVLFTYNLHP----SVIK-------QCEFPWSFSSESTDTGYPLALEIEE 3697
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 334 VAEGLVPTVCALWQAPEMVPHIIIHTP 414
+A G V WQ E VP I IH P
Sbjct: 245 LAVGRVDGTLQFWQDNERVPRISIHHP 271
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +1
Query: 151 LKNSEKKQLAQRIIHEFPTITEEKVKQLVPAKSIGICMKLVLSSGDIVNVYVIDGVPIIM 330
L SE + + FP + + V + ++ G C + +L + VID +P +
Sbjct: 282 LDKSELPPWEESRVKTFPLLWKNPVTGKLALQTHGCCAEKILIDNEDGTTTVIDDLPKVR 341
Query: 331 EV 336
E+
Sbjct: 342 EI 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,473
Number of Sequences: 5004
Number of extensions: 54654
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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