Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13p11
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 43 2e-04
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 32 0.28
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 29 2.6
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490... 28 4.6
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175... 28 4.6
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 28 4.6
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 28 4.6
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 28 6.1
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 28 6.1
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327... 27 8.0
08_01_0180 - 1524302-1524877,1525998-1527056 27 8.0
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 43.2 bits (97), Expect = 2e-04
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Frame = +1
Query: 112 MFAKPYKLKSNNTLKNSEKKQLAQRIIHEFPTITEEKVKQLVPAKSIGICMKLVLSSGDI 291
MF K +K+ L ++KK+L + FP ++ + ++P K V +
Sbjct: 1 MFKKHVDVKALQRLSGADKKKLRRTAKERFPQASDADLDAILPPK----VEVTVAKYPNR 56
Query: 292 VNVYVIDG-VPIIMEV---AEGLVPT----------VCALWQAPEMVPHIIIH-TPVFPK 426
V VY I+G P++ ++ L PT V ALW+ P+++P + V
Sbjct: 57 VLVYGIEGEFPMLFDIDGRGHELFPTEHSLTGENIAVYALWKVPDLLPAFTLKGGEVSRF 116
Query: 427 VQGGAPLYLPGVELPAGGTGFPQFCKGE 510
+ GGA L PG+ +P G P F G+
Sbjct: 117 ILGGADLMFPGISIPP--EGLPSFQPGQ 142
>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 32.3 bits (70), Expect = 0.28
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -1
Query: 515 INSPLQNCGKPVPPAGSSTPGRYRGAPPWTF--GKTGVCIMICGTISGACQSAHTVGTNP 342
+ S L P +G STP Y+G PP T+ + T A SA GT P
Sbjct: 878 LGSQLYAGANPPYTSGQSTP--YQGVPPTTYHQPRPPTQFQTVPTAPPAVSSATVPGTTP 935
Query: 341 SATSIIIGTPSITYTFTMSPEDNTNFMQMP 252
S + G + T P +N F+Q P
Sbjct: 936 S--QMFPGPVANNPTSRFMPSNNPGFVQRP 963
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 494 CGKPVPPAGSSTP--GRYRGAPPWTFGKTGVCIMI 396
CG P+PP G + P GR RG+P G I++
Sbjct: 799 CGIPLPPCGHNPPWGGRPRGSPDGKRKVIGASILV 833
>10_08_0659 +
19647037-19647464,19647569-19647659,19648998-19649039,
19649179-19649237,19649559-19649634,19649735-19649866,
19650251-19650358,19651040-19651094,19651187-19651437
Length = 413
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 175 TVSFLNSLTCYWISTYTVLRTFRFFVR 95
T+SF + CYWI++ T+ F +R
Sbjct: 307 TMSFAKGIFCYWITSNLFTLTYGFVIR 333
>10_01_0152 -
1754113-1754286,1754396-1754551,1755273-1756194,
1756364-1756414,1757540-1757946,1758918-1759067,
1759178-1759333,1760175-1761041
Length = 960
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -1
Query: 443 GAPPWTFGKTGVCIMICGTISGACQSAHTV-GTNPSATSIIIGTPSITYTFTMSPEDNTN 267
G P W C + IS T+ T S+ I TPS+TY P D+
Sbjct: 186 GCPAWESLFLDECAVNDVEISSQTLKVLTIKNTLFSSDKTTISTPSVTYLKLWRPVDSCV 245
Query: 266 FMQMPI 249
F MP+
Sbjct: 246 FNDMPL 251
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 415 VFPKVQGGAPLYLPGVELPAGGTGFPQFC 501
+FP GG P +L V LP+G + FC
Sbjct: 74 LFPSKAGGIPAWLDPVNLPSGNSRCCGFC 102
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 418 FPKVQGGAPLYLPGVELPAGGTGFPQFC 501
FP GG P +L V LP+G + FC
Sbjct: 64 FPNKAGGVPAWLDPVNLPSGKSRCCDFC 91
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 524 CAAINSPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISG 378
C +P P PP +TP + P T K G C + G ISG
Sbjct: 27 CGKCPTPPPPALPPPPPPTPTTPSYHNKCPVNTL-KFGACADVLGAISG 74
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -1
Query: 524 CAAINSPLQNCG--KPVPPAGSSTPGRYRGAP 435
C+ PL CG P PPAG + R P
Sbjct: 334 CSTTTQPLPTCGTPAPAPPAGQPSSAEDRATP 365
>12_01_0411 +
3276679-3276687,3277430-3277493,3278256-3278297,
3279047-3279063,3280011-3281258
Length = 459
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 485 PVPPAGSSTPGRYRGAPPWTFGKTGVC 405
P P G STP +GA W +T +C
Sbjct: 277 PPYPIGKSTPVHVKGAIYWMVSRTSLC 303
>08_01_0180 - 1524302-1524877,1525998-1527056
Length = 544
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 397 IIIHTPVFPKVQGGAPLYLPGVELPAGGTGFPQFCKGEL 513
+ +H P+F ++Q G L GV++P + FP F + +L
Sbjct: 92 VAVHDPIFYELQFGLVDPLTGVDIPF--SSFPHFAEHKL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,495
Number of Sequences: 37544
Number of extensions: 360077
Number of successful extensions: 1074
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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