Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13p09
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p... 30 1.5
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical... 29 2.5
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 29 3.4
Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 29 4.4
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 28 5.9
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 28 7.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 7.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.8
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSACLTPL 711
P+P + T+T +NP TPTT TS N ++P+ + + AP +P
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548
Query: 712 VT 717
T
Sbjct: 549 TT 550
>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
protein T20D3.11 protein.
Length = 1843
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 515 PYASSHPPLRSRLHQPDHQIPDS 583
P +S HPPL S H +H PD+
Sbjct: 66 PTSSHHPPLNSSSHHSNHNYPDT 88
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP--YXXEFAPGLKPPLSSEAPSACLT 705
P+P + T+T +NP TPTT + +I +P P + P S+ AP+A +
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547
Query: 706 P 708
P
Sbjct: 548 P 548
>AL132862-11|CAB60541.1| 396|Caenorhabditis elegans Hypothetical
protein Y73F8A.16 protein.
Length = 396
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 249 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 353
F L F++TG E KS V + S+ +I GYR+
Sbjct: 37 FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 523 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFA-PGLKPPLSSEAP 690
+ PP PA +A + + P + + ++NP TP + P PPLSS P
Sbjct: 166 VPPPPPAATAAVSMNGGGPGSAPGSAHSVNNNVNPGTPGSNPLSNPMSNPPLSSGPP 222
>Z70213-6|CAA94176.1| 167|Caenorhabditis elegans Hypothetical
protein ZK930.7 protein.
Length = 167
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 526 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLT 633
KPP+P+ T N + P++P T S PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 523 IKPPSPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 636
+ SPAI +T+T +++P+ T TP+ +T++ + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 635 GVRGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 474
G GL D G G G D V + + G+ G +GE N ++G RGG
Sbjct: 167 GPPGLAGQDGLDGAPGEPGVGGMDAVKIVSVDGKIG--RRGEAGNKGSKGSRGG 218
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSACL 702
P+P I R PR TP L + I+P+ +F P + PP +P L
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQAL 567
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 532 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXXEFAPGLKPPLSSEAPSACL 702
P+P I R PR TP L + I+P+ +F P + PP +P L
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQAL 567
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 438 TADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI---NPIIKSPIPYTNHPRLN 608
TADV+ G +VL+T + + +TLP D N I ++ I ++
Sbjct: 2636 TADVSFIGRSVLSTETLDVVLEEKDMSQMNSTLPLDYERAFSSNTIRETDILSDESITVD 2695
Query: 609 IHFHQSPDAVLXXIRAGVKASVVIRGSISVSHPP 710
+H+SP+ + R+ VK+ V + S+ H P
Sbjct: 2696 SSYHKSPEPTVDFARSQVKSEEVTE-NFSLIHKP 2728
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 438 TADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI---NPIIKSPIPYTNHPRLN 608
TADV+ G +VL+T + + +TLP D N I ++ I ++
Sbjct: 2636 TADVSFIGRSVLSTETLDVVLEEKDMSQMNSTLPLDYERAFSSNTIRETDILSDESITVD 2695
Query: 609 IHFHQSPDAVLXXIRAGVKASVVIRGSISVSHPP 710
+H+SP+ + R+ VK+ V + S+ H P
Sbjct: 2696 SSYHKSPEPTVDFARSQVKSEEVTE-NFSLIHKP 2728
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +3
Query: 438 TADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI---NPIIKSPIPYTNHPRLN 608
TADV+ G +VL+T + + +TLP D N I ++ I ++
Sbjct: 2636 TADVSFIGRSVLSTETLDVVLEEKDMSQMNSTLPLDYERAFSSNTIRETDILSDESITVD 2695
Query: 609 IHFHQSPDAVLXXIRAGVKASVVIRGSISVSHPP 710
+H+SP+ + R+ VK+ V + S+ H P
Sbjct: 2696 SSYHKSPEPTVDFARSQVKSEEVTE-NFSLIHKP 2728
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,094
Number of Sequences: 27780
Number of extensions: 313483
Number of successful extensions: 1291
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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