Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13p07
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    29   0.48 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.9  

>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -3

Query: 598 KLIKAYQKHSNTYQSCTNHKYKSVLLKKWTQDVMDN-ELLIEFRPYKNCDAFCLMCLSVV 422
           K I A  +   TY++ T H  +S LL++W + +M+N + L++    +N        + V 
Sbjct: 59  KAISAANEAFKTYKNFT-HVQRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVT 117

Query: 421 TINEYL 404
           T + YL
Sbjct: 118 TCSGYL 123


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 25/102 (24%), Positives = 41/102 (40%)
 Frame = -3

Query: 556 SCTNHKYKSVLLKKWTQDVMDNELLIEFRPYKNCDAFCLMCLSVVTINEYLCCDKCLFPI 377
           +C N ++ S   KK   D+     +I+FR  KN     ++  ++  I  Y     CL  I
Sbjct: 54  NCCNRRFHSTWQKKKHDDLTATVPVIDFR--KNQKLTSIVVNAIQAIYWYARRSNCLTGI 111

Query: 376 IDYLEKRRQLTPRQQLYMFVFLSICYWKEASGATFGDNEKLI 251
            +     + L P    Y FV L     K  +   +   +K+I
Sbjct: 112 NEAEYIWKSLIPESIFYHFVSLQSFIRKYLTDVFYCSAQKVI 153


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/65 (26%), Positives = 23/65 (35%)
 Frame = +2

Query: 470 TKFYEKFVVHDVLRPFFQQDTFIFVICTTLVRVRVFLISFDKFKTIGIRPRHYVLHRLFK 649
           T F  K       +P       +F I + L  V+     FD     G++P H     L K
Sbjct: 350 TTFINKMSDVKEFKPSISTANTLFSIASRLKDVKWLSAGFDMIDKYGLKPTHVTYRSLLK 409

Query: 650 RQKLL 664
              LL
Sbjct: 410 AYCLL 414


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 154 CPSSIANILWTTQNS 198
           CP SI N++WT Q++
Sbjct: 292 CPRSIQNLVWTNQST 306


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = -3

Query: 487  LLIEFRPYKNCDAFCLMCL--SVVTINEYLCCDKCLFPIIDYLEKRRQLTPRQQLYMFVF 314
            L++ F+PY++   + L CL       +EYL   +     I Y+  +  +       + + 
Sbjct: 2883 LIVPFKPYESLGKYMLSCLDDGKYAFDEYLYHAEIQNVDILYISTKHFIITGSNYIVKIA 2942

Query: 313  LSICYWKEASGATFGDNE-KLIWIHRFRIAWESADVPFVCYFASS 182
            + +   K+ SG    +++     +  F + W+  +  F C + S+
Sbjct: 2943 VPV---KQISGLRVSEHDLNSSCLFTFAVFWQRCESLFDCEYLST 2984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,988
Number of Sequences: 5004
Number of extensions: 60807
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)