Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13p07
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    27   9.5  

>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 621 VIMFCTVCLKDRNYYMFQLF 680
           + +FC VCLK+R Y +FQ F
Sbjct: 250 IFVFCEVCLKNRLYLLFQFF 269


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 598 KLIKAYQKHSNTYQSCTN--HKYK-SVLLKKWTQDVMDNELLIEFRPYKNCDAF-CL 440
           KL   + KHS   +   N  + YK  V+  +W  D +   L++  +PYK  D+  CL
Sbjct: 489 KLYIIFSKHSKAIEESKNIENLYKCDVVTMEWVLDSISEYLILPTQPYKAVDSIGCL 545


>Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical
           protein ZC412.1 protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 209 HVRALPRYSKTMDPY*FFIVAKRRSAGLLP----ITNTQKHKHVQLLSRRQLSPFFQVIY 376
           +V  +   S   +P  +F ++KR    L      +TN ++H +V +LSR   SP   V+Y
Sbjct: 303 NVHVIAMTSIVWNPVLYFWMSKRHRRALKDDMTWLTNARRHTNVGVLSRFTPSPSVSVVY 362


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = +2

Query: 488 FVVHDVLRPFFQQDTFIFVICTTLVRVRVFLISFDKFKTIGIRPRHYVLHRLFKRQKLLY 667
           +++H + +  F+   F+ +    +  + +FL     +  +  RPR Y +H LF+     +
Sbjct: 33  YIIHQLRKNVFKSSFFLIIRMHAITDLLMFL-----YVELVARPRKYRVHNLFEAANDHW 87

Query: 668 VPTI 679
           +P +
Sbjct: 88  IPQL 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,660
Number of Sequences: 27780
Number of extensions: 348357
Number of successful extensions: 925
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)