Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13p03
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    30   2.9  
AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA...    30   2.9  
AE014134-3561|AAN11140.1|  600|Drosophila melanogaster CG31601-P...    30   3.8  
BT021965-1|AAX94786.1| 1953|Drosophila melanogaster GH12955p pro...    29   6.7  
AE014134-2132|AAF53146.1| 1953|Drosophila melanogaster CG6734-PA...    29   6.7  
AY094744-1|AAM11097.1|  790|Drosophila melanogaster GM01751p pro...    29   8.8  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   8.8  

>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -3

Query: 532 SCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 353
           SC  +++ +  S RAVS +    +I     +SD  A A S +  ++  ++   LA   + 
Sbjct: 782 SCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYT 841

Query: 352 SI 347
            +
Sbjct: 842 QL 843


>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
            protein.
          Length = 2733

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
 Frame = +3

Query: 363  VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 542
            V+A++  + +  +   A   E N  L+  + + +VA        + CE+ +    Q+   
Sbjct: 2078 VVARMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 2131

Query: 543  MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 719
            +  I Q++   + S+  +  +L    VG       +   RSL   +KRLG   +I SSDY
Sbjct: 2132 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 2185

Query: 720  V 722
            V
Sbjct: 2186 V 2186


>AE014134-3561|AAN11140.1|  600|Drosophila melanogaster CG31601-PA
           protein.
          Length = 600

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 162 LEHGAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPWPQ 37
           LE G  FG   + S  T ++  + +P+   HI NC  C W Q
Sbjct: 238 LEDGELFGEDNEVSSNTIKKEDNRMPICRYHIRNC--CIWGQ 277


>BT021965-1|AAX94786.1| 1953|Drosophila melanogaster GH12955p
           protein.
          Length = 1953

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 105 DGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVL-ITKSGVIQLIMKSKLPYAIE-L 278
           DG Y++     DQ  HH  D +++    +Y+   T   I  + V  + + ++ P +I+ L
Sbjct: 424 DGSYQAI---GDQAPHHVSDFLSEITYFVYMARRTPQSILCAHVRPIWVPAEYPVSIQRL 480

Query: 279 QEWLLEEVIPQVLCTGKYAPAVEMDTNDV 365
           QEW  +E IP+         ++  D  D+
Sbjct: 481 QEWTPDECIPEFYSDPMIFKSIHEDLPDL 509


>AE014134-2132|AAF53146.1| 1953|Drosophila melanogaster CG6734-PA
           protein.
          Length = 1953

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 105 DGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVL-ITKSGVIQLIMKSKLPYAIE-L 278
           DG Y++     DQ  HH  D +++    +Y+   T   I  + V  + + ++ P +I+ L
Sbjct: 424 DGSYQAI---GDQAPHHVSDFLSEITYFVYMARRTPQSILCAHVRPIWVPAEYPVSIQRL 480

Query: 279 QEWLLEEVIPQVLCTGKYAPAVEMDTNDV 365
           QEW  +E IP+         ++  D  D+
Sbjct: 481 QEWTPDECIPEFYSDPMIFKSIHEDLPDL 509


>AY094744-1|AAM11097.1|  790|Drosophila melanogaster GM01751p
           protein.
          Length = 790

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = +3

Query: 363 VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 542
           V+ ++  + +  +   A   E N  L+  + + +VA        + CE+ +    Q+   
Sbjct: 135 VVTRMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 188

Query: 543 MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 719
           +  I Q++   + S+  +  +L    VG       +   RSL   +KRLG   +I SSDY
Sbjct: 189 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 242

Query: 720 V 722
           V
Sbjct: 243 V 243


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 559  CAMSAMRLASCAVSRRAFSQSCRAV 485
            C +   + ASCAV  R + Q CR V
Sbjct: 2148 CNLPCTKTASCAVGERCYQQVCRKV 2172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,602,012
Number of Sequences: 53049
Number of extensions: 868744
Number of successful extensions: 2831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2824
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)