Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13o24
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    29   0.45 
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   2.4  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   5.6  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   7.4  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.7  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    25   9.7  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    25   9.7  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 474 CPRQVENALAPLNAWTWSTGKSMLRIQNGST-GPSSPEVRS---DTSSKPQGLGTTGK 635
           CP+Q+E ALA      +  G       N +T  P+   +RS    T S P  +G TGK
Sbjct: 409 CPQQIEEALASGITTMYGGGTGPSTGTNATTCTPNKDLIRSMLRSTDSYPMNIGLTGK 466


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 87  ISRNRFHFYFKATRCCNSFMSIRHTT 164
           +SRN FH +F   + C+   S+R+ T
Sbjct: 148 LSRNLFHEFFPILKLCSQLPSLRNLT 173


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 343 SIGAVDLFP--NISRFVNEQASSSPGRQFSYSFRAPRLHHRE 224
           +I A   FP  + SR  +E+ +S    Q SYS + P +H RE
Sbjct: 548 NINANYTFPTTSYSRRNDEEITSGASSQKSYSRQEPMIHRRE 589


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 119  SNPLLQQF-YVHSPYDIVDVASQASRVYPSLSRRSELTVMETRCAKGVRELAPRRRGCLF 295
            S PL +++ YV S   ++++ S A  +  +    S L V + + A    ELA +    LF
Sbjct: 989  SVPLSEKYEYVESVIKLLEMESYAEAIIGTPG--SGLNVEQRKRATIGVELAAKPALLLF 1046

Query: 296  IDEPT 310
            +DEPT
Sbjct: 1047 LDEPT 1051


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 355 RQSASIGAVDLFPNISRFVNEQASSSPGRQFSYSFRAP 242
           RQS S G + + P  S      A S+  +QFS S  +P
Sbjct: 244 RQSHSAGVIPIKPTASNASIRNAPSNLSKQFSPSGNSP 281


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 321 FLTSVGSSMNKHPRLLGASSLTP 253
           + TSV S M++HP L+  S+  P
Sbjct: 363 YTTSVPSGMSRHPMLMNPSTPEP 385


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 187 VPSVSFIEPEVRAHGDGDEVRERSKRTGAQE 279
           +P   +IE  +R HG   +  ER ++  A+E
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAARE 31


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 122 NPLLQQFYVHSPYDIVDVASQASRVY 199
           N  L QF VHS  DIVD     S  +
Sbjct: 32  NSHLNQFIVHSSLDIVDQLQWTSNAF 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,967
Number of Sequences: 5004
Number of extensions: 59826
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)