Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13o24
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875...    29   2.5  
07_03_1033 - 23417749-23418012,23418027-23418137                       28   7.6  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    28   7.6  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    28   7.6  

>09_04_0532 +
           18386593-18386722,18386826-18386900,18387098-18387510,
           18387682-18387688,18387944-18388005,18388046-18388341,
           18388456-18388813,18388916-18389491,18389956-18390231
          Length = 730

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = +2

Query: 122 NPLLQQFYVHSPYDIVDVASQASRVYPSLSRRSELTVMETRCAKGVRELAPRRRGCLFID 301
           +P+++Q    S  D    + QA R      R  +   M       + E+ P+    LF+D
Sbjct: 496 SPVMKQLESQSMIDYYFKSGQARRDENPKFRNPKYLSMLNHLRFYLPEIFPKLSKVLFLD 555

Query: 302 EPTDVRKKIYSANTCRLSCRSKRAVELCG 388
           + T V++ + +  +  L  +   AVE CG
Sbjct: 556 DDTVVQQDLSAIWSIDLKGKVNGAVETCG 584


>07_03_1033 - 23417749-23418012,23418027-23418137
          Length = 124

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 483 QVENALAPLNAWTWSTGKSMLRIQNG---STGPSSPEVRSD 596
           + EN +A L  W W +  S+    NG   + GP  PE+  D
Sbjct: 23  KAENGVAKLEIWHWKSFYSIALASNGVYVNHGPEVPELVGD 63


>03_03_0008 -
           13674602-13674708,13675272-13675439,13676169-13676787,
           13676868-13677330,13677855-13678036,13678093-13678235,
           13678315-13678423,13679000-13679456,13680490-13682473,
           13682507-13682626,13682920-13682971
          Length = 1467

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +1

Query: 589 DQIHHPSPKDSVQQGNCLLLTGPD 660
           D IH  SP DS QQ N   LTG D
Sbjct: 807 DNIHSRSPFDSQQQKNLSKLTGHD 830


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 481  RGQEMGVSTQARHSCHRADRAFFVYVIKR 395
            RG+  G     RHS +  D AFF Y  KR
Sbjct: 1135 RGRRWGAKMPQRHSKNNNDLAFFTYEEKR 1163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,627,253
Number of Sequences: 37544
Number of extensions: 427932
Number of successful extensions: 1109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)