Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13o24
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical pr... 38 0.005
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 35 0.059
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 34 0.10
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 34 0.10
U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical pr... 33 0.24
U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical p... 32 0.42
Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical p... 32 0.42
Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z66523-8|CAE17855.1| 155|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 6.8
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 6.8
U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical pr... 27 9.0
>U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical
protein C24G7.1 protein.
Length = 608
Score = 38.3 bits (85), Expect = 0.005
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 11/157 (7%)
Frame = +2
Query: 137 QFYVHSPYDIVDVASQASRVYPSLSRRSELTVMETRCAKGVRELAPRRR-GCLFIDEPTD 313
Q++VH P I ++S V P+ +V T + EL P + G P+
Sbjct: 301 QYFVHPPNTIPHLSSDEFTVTPN-------SVAYTAISSERFELLPTNKWGNCTEHYPSG 353
Query: 314 VRKKI-YSANTCRLSCRSKRAVELCGCRPFYYVNEEG-PVCS-VAGMAC------XXXXX 466
++ + Y C C++K +E CGC P Y NE C+ +AC
Sbjct: 354 IKSDLPYLTGNCVSLCKAKFFMENCGCTPAVYNNERNLKECTPFETLACVNNHNGSNNAT 413
Query: 467 XXXXXXXXKCS-CTPQCLDMVYREINVKDTKWEHGPF 574
+C+ C QC +++YR N + ++ F
Sbjct: 414 GKLEFKLPRCAQCAQQCNNLIYRAFNSQGNQFSARAF 450
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 34.7 bits (76), Expect = 0.059
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 12/158 (7%)
Frame = +2
Query: 137 QFYVHSPYDIVDVASQASRVYPSLSRRSELTVMETRCAKGVRELAPRRR-GCLFIDEPTD 313
+++VH P I ++S V P+ TV + + L P + G + P
Sbjct: 316 RYFVHPPNTIPHLSSDEFTVSPN-------TVAFSAISSDRYVLLPTHQWGNCTENFPDG 368
Query: 314 VRKKI-YSANTCRLSCRSKRAVELCGCRPFYYVNE---------EGPVCSVAGMACXXXX 463
++ + YS+ C C++K +E CGC P Y E E C +A
Sbjct: 369 IQSNLSYSSGNCLSLCKAKFYMENCGCTPALYNIENNLKECTPYETTTCLDNILAKPNKE 428
Query: 464 XXXXXXXXXKC-SCTPQCLDMVYREINVKDTKWEHGPF 574
C +C QC +VYR N +++ G F
Sbjct: 429 TGKIEFQTPNCKACAQQCNSLVYRAYNSYGSQFSAGAF 466
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +2
Query: 329 YSANTCRLSCRSKRAVELCGCRPF-YYVNEEG---PVCSVAGM-ACXXXXXXXXXXXXXK 493
Y+A C + C+ ++ LCGC P Y E G +C+ + C +
Sbjct: 303 YTATHCEIDCKLRKVRNLCGCSPLAYSARESGSNDTICTPYQIQQCFRKVRGLDNRWEDE 362
Query: 494 CSCTPQC 514
C C +C
Sbjct: 363 CDCPSEC 369
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +2
Query: 329 YSANTCRLSCRSKRAVELCGCRPF-YYVNEEG---PVCSVAGM-ACXXXXXXXXXXXXXK 493
Y+A C + C+ ++ LCGC P Y E G +C+ + C +
Sbjct: 303 YTATHCEIDCKLRKVRNLCGCSPLAYSARESGSNDTICTPYQIQQCFRKVRGLDNRWEDE 362
Query: 494 CSCTPQC 514
C C +C
Sbjct: 363 CDCPSEC 369
>U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical
protein C24G7.4 protein.
Length = 663
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 329 YSANTCRLSCRSKRAVELCGCRPF-YYVNEEGPVCS 433
YSA+ CR C ++ + CGC PF Y V+ +C+
Sbjct: 346 YSASACRALCIAQFFNDTCGCAPFTYNVDGRKKICA 381
>U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical
protein F28A12.1 protein.
Length = 613
Score = 32.7 bits (71), Expect = 0.24
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 137 QFYVHSPYDIVDVASQASRVYPSLSRRSEL-TVMETRCAKGVRELAPRRRGCLFIDEPTD 313
++++H P+ D+A++ V PS S + TV+ L G P
Sbjct: 269 RYFIHPPHVSPDLAAEGITVSPSRVVNSAIKTVLHDL-------LNHENWGNCTSSWPEH 321
Query: 314 VRKKI-YSANTCRLSCRSKRAVELCGCRPF-YYVNEEGPVC 430
+ YS++ C+ C S +LCGC P+ Y ++ VC
Sbjct: 322 YNTNLPYSSSACQALCVSNYFKKLCGCSPYSYNIDNNTQVC 362
>Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical
protein C41C4.5b protein.
Length = 887
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 329 YSANTCRLSCRSKRAVELCGCR-PFYYVNE 415
YS C SC K VE CGC P Y V E
Sbjct: 548 YSVEACHRSCAQKVIVEACGCADPMYPVAE 577
>Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical
protein C41C4.5a protein.
Length = 849
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 329 YSANTCRLSCRSKRAVELCGCR-PFYYVNE 415
YS C SC K VE CGC P Y V E
Sbjct: 510 YSVEACHRSCAQKVIVEACGCADPMYPVAE 539
>Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical
protein F23B2.3 protein.
Length = 626
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +2
Query: 137 QFYVHSPYDIVDVASQASRVYPSLSRRSELTVMETRCAKGVRELAPRRRGCLFIDEPTDV 316
+++VH I ++AS V P+ S ++ L P G D P +
Sbjct: 304 RYFVHPKDTIPNLASDEYTVSPNSVAYSAISKFRYVL------LPPNDWGNCTEDYPYGI 357
Query: 317 RKKI-YSANTCRLSCRSKRAVELCGCRPFYY 406
+ + Y++ C C++K + CGC P Y
Sbjct: 358 QSNLSYTSGNCLSLCKAKYFMNQCGCTPALY 388
>Z66523-8|CAE17855.1| 155|Caenorhabditis elegans Hypothetical
protein M05D6.8 protein.
Length = 155
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 155 PYDIVDVASQASRVYPSLSRRSELTVMETRCAK 253
P + D++ + S+V P +R T+M +CAK
Sbjct: 88 PINCYDISKRCSKVKPLCTRNEYKTIMMRQCAK 120
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 236 ETRCAKGVRELAPRRRGCLFIDEPTDVRKKIYSANTCRLSCRSKRAVELCGCRPFYYVNE 415
+ +C G L+ RR C+ IDE N C C + + C CR Y +
Sbjct: 276 QCQCYPGFH-LSYDRRSCVDIDECA-------KNNGCEHFCENVKGTYRCKCREGYQLGR 327
Query: 416 EGPVC 430
+G C
Sbjct: 328 DGRTC 332
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 233 METRCAKGVRELAPRRRGCLFIDEPTDVRKKIYSANTCRLSCRSKRAVELCGCRPFYYVN 412
+E +C G R L R+ C I E + + C C ++ +C C P + ++
Sbjct: 399 VECQCKPGFR-LMKDRKTCEDISECSS------NNGGCEQICSNQEGGYMCSCEPGFELS 451
Query: 413 EEGPVC 430
E+G C
Sbjct: 452 EDGHSC 457
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 236 ETRCAKGVRELAPRRRGCLFIDEPTDVRKKIYSANTCRLSCRSKRAVELCGCRPFYYVNE 415
+ +C G L+ RR C+ IDE N C C + + C CR Y +
Sbjct: 276 QCQCYPGFH-LSYDRRSCVDIDECA-------KNNGCEHFCENVKGTYRCKCREGYQLGR 327
Query: 416 EGPVC 430
+G C
Sbjct: 328 DGRTC 332
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 233 METRCAKGVRELAPRRRGCLFIDEPTDVRKKIYSANTCRLSCRSKRAVELCGCRPFYYVN 412
+E +C G R L R+ C I E + + C C ++ +C C P + ++
Sbjct: 399 VECQCKPGFR-LMKDRKTCEDISECSS------NNGGCEQICSNQEGGYMCSCEPGFELS 451
Query: 413 EEGPVC 430
E+G C
Sbjct: 452 EDGHSC 457
>U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical
protein F20B6.1 protein.
Length = 166
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 276 GDEDACSLTNRLMLG-KRSTAPILADCRAGV 365
G D+C +RL+ K+ P++A C AGV
Sbjct: 89 GMPDSCDTAHRLLSAVKKDKKPVIAHCSAGV 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,323,167
Number of Sequences: 27780
Number of extensions: 353236
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -