Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13o18
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    29   1.9  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    28   3.3  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   3.3  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   3.3  
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294...    28   4.4  

>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 26  ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 181
           E   G+NV+  CE    A+  +  +S  +V    + W  + L+ L  ++  +
Sbjct: 182 EPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +2

Query: 11   VNLVDESAFGSNVINYCEQF--ITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 184
            V +VDE  +GS +  Y E+   I   FE F  ++  +   P++ E  N+ +LL+ + +L 
Sbjct: 856  VPIVDEEFYGSKLRGYVEELRAIGVQFE-FANANLHIADQPLSME--NVILLLQWIKDLR 912

Query: 185  LIGIEI 202
             IG+++
Sbjct: 913  SIGVQL 918


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 403 ANWPPGRY*ALRLIVCSRLIPPIRC 329
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 358 CSRLIPPIRC-SALNWATPRLR 296
           CS  +PP+RC   L W+ PR++
Sbjct: 23  CSSRLPPLRCFVGLRWSAPRIQ 44


>10_08_1063 -
           22628642-22628716,22628806-22629012,22629325-22629433,
           22629547-22629657,22630466-22630513,22630636-22630713,
           22632151-22632254,22632360-22632470,22632555-22632791
          Length = 359

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 274 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 453
           T   N+  L + SP+    S+ +E D  KR+           L I +G + +     +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213

Query: 454 PLSID 468
           P S+D
Sbjct: 214 PFSVD 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,507
Number of Sequences: 37544
Number of extensions: 209552
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)