Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13o02
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.5  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    27   3.3  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    26   5.8  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   7.6  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
 Frame = -3

Query: 587 TMSFTLRSATAASTEYNGPMT*GIVVPSSSGLTNPSNITCFSLNLLTIVTLSLMLQKVA* 408
           T + T  SAT++S +YN         PSS+ L++ ++ T  S +   + +++      A 
Sbjct: 261 TTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS 320

Query: 407 I*ALSNPSTIINTLNLANGERHLTF--KQISVSIKLHGIMVMRSTQLGSSSPFKLIGVNI 234
              LS+ S+  +T   +     L+      + S     +  + ST   S+S   L  VN 
Sbjct: 321 STPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380

Query: 233 T 231
           T
Sbjct: 381 T 381


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 521 GIVVPSSSGLTNPSNITCFSLNLLTIVTLSL 429
           GI  PS SG T+ + +   +LNL  +V LSL
Sbjct: 25  GIAGPSGSGKTSVAQLIVKALNLPHVVILSL 55


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 590 IQLKTNRQC*KYLLTRLMCITNGICLK 670
           I+ +TN Q   YL+ +     +GICLK
Sbjct: 29  IKYRTNEQSQNYLIAKAFESASGICLK 55


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 604 GFQLNLPCPSLYDRRQQRR 548
           GFQLNL   +LY+RR +++
Sbjct: 561 GFQLNLSKATLYNRRHRQK 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,772
Number of Sequences: 5004
Number of extensions: 54838
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)