Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13n20
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   1.1  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   1.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   7.5  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 313 NSRLKYCKLFQLFTAYTVADNIIN 242
           N  +K  K+FQ F  Y    +I+N
Sbjct: 111 NVHIKISKIFQCFMKYKTITDILN 134


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 313 NSRLKYCKLFQLFTAYTVADNIIN 242
           N  LK  K+FQ  T +   ++I+N
Sbjct: 111 NVHLKITKIFQCITKFKTINDILN 134


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 340 FNLIISKKKNSRLKYCKLFQLFTAYTVADNI 248
           F+ + SK  ++ L+Y +L     ++TV D I
Sbjct: 224 FHRLTSKTFDNDLRYSELAVAGESFTVHDGI 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,970
Number of Sequences: 438
Number of extensions: 1804
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)