Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13n18
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...   137   2e-33
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    28   1.0  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    28   1.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   1.8  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.3  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score =  137 bits (331), Expect = 2e-33
 Identities = 57/119 (47%), Positives = 87/119 (73%)
 Frame = +2

Query: 305 PKKCSGRKLLRHNLIKNLKLGHRFQGLVLSPVGTQCVSPNDKSIIETFGLAVIDCSWAKI 484
           P  CSG++L R   ++NL++G +F+G+V++P G   VSP DK   +  G +V++CSWA+I
Sbjct: 39  PNACSGKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVVECSWARI 98

Query: 485 DETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEALAAAMFITGHKSEAKFYLSKF 661
           +E PFSR+     RLLP+LVA+NP+NYG+P++L+C EALAA M+I G+ +EA+  +  F
Sbjct: 99  EEIPFSRIGGRCERLLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNF 157



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 259 KATFSVSMWDLNHCDPKKMFG 321
           K    ++MWD  HC+P    G
Sbjct: 24  KFPLPLAMWDFGHCNPNACSG 44


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 525 LGCGDFILLNGVSSIFAHEQSMTANPNVSIMLLSLGLTH*VPTGDKTKP*NLCPSFKF 352
           LGCGD +L N + S       + A+P++      LGL   V  G+K    +  PS  F
Sbjct: 40  LGCGDGVLTNELVSQCRRVVGIDASPDMIKAARELGLNAYVIPGEKLLDASEIPSESF 97


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 161 CFERLPCTLPFFPGAILFEIFTLHNSICQVMYLN 60
           CF       PFF   + F++  +H SI QV ++N
Sbjct: 292 CFFLYSLLTPFFDIHLQFQLIVMHMSIVQVGFIN 325


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +2

Query: 419  PNDKSIIETFGLAVIDCSWAKIDETPFSRMKSPHPRLLPFLVAANPINYGKPYQLSCVEA 598
            P D+  I+   + + +C +   +   FS+   P+     FL+A   + YG P     V  
Sbjct: 949  PLDRKRIDAISVILSECGFVLFN---FSQ---PYYYYFSFLLAEMYLRYGNPSLRYSVMF 1002

Query: 599  LAAAMFITGHKSEAKFYLSK 658
            LA+  F+T  K E    +S+
Sbjct: 1003 LASYCFVTRRKPEFLLRISQ 1022


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 319 RTFFWDRNDSDPTCLLKM 266
           ++FF   +DSD TCLLK+
Sbjct: 335 KSFFLIASDSDDTCLLKI 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,918
Number of Sequences: 5004
Number of extensions: 54418
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)