Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m13
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 413 LTNRLHITTIDQLKKFRDYLNSDADAGEF 499
           +   LH+      K F DY NS  + GE+
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEY 228


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 413 LTNRLHITTIDQLKKFRDYLNSDADAGEF 499
           +   LH+      K F DY NS  + GE+
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEY 228


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 606 WKLFVIILSWCSLKAMPYGEIVIKMT 683
           W+ F  I+ W S   + +  I+I +T
Sbjct: 401 WRHFAAIIEWLSFFIVIFTYIIILIT 426


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 91  TGSGKIEGRTNCRKRSSEQASADV 162
           TG+ K  G    R+RSS+   A+V
Sbjct: 367 TGASKSHGDLELRQRSSKSLLANV 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,973
Number of Sequences: 438
Number of extensions: 3402
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)