Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m11
         (134 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   1.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    24   2.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   2.4  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    23   5.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    23   7.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   7.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    23   7.3  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    22   9.7  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    22   9.7  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 27  RPLQKKRRAPTEQEKTRSY 83
           RPL+K R  PTE +K +++
Sbjct: 104 RPLRKSRTGPTEIKKAKNF 122


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 2    FETASRRVQTSPEEEESANRTRKDSLLRPAPVKPRGPCERHKK 130
            FE A+++  T P     A  T    +  PAPVKP  P  R  +
Sbjct: 894  FEIANKQQATEPISAPFATET----ISTPAPVKPPVPPSRRDR 932


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 5   ETASRRVQTSPEEEESANRTRKDSLLRPAPVKPRGP 112
           E+ASR    S +E E    +     L P+P  P  P
Sbjct: 349 ESASRSTIRSTDEREPERTSEDPPQLPPSPSSPSSP 384


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 18  DESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKK 131
           D  R L KK     + E  R Y L RSS+E R   IKK
Sbjct: 660 DIQRDLAKKALECNKLEN-RVYDLVRSSYEQRNFLIKK 696


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
          I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 35 PEEEESANRTRKD 73
          P+EEESA  T KD
Sbjct: 13 PDEEESAGLTNKD 25


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 50  SANRTRKDSLLRPAPVKPRGPCERH 124
           S  R     + +P PV+PR P E++
Sbjct: 66  SGQREANQQIPQPVPVQPRYPDEQN 90


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 2   FETASRRVQTSPEEE-ESANRTR 67
           FET+    QTSPEE+ E+ N  +
Sbjct: 639 FETSPTVFQTSPEEDKENVNNIK 661


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 20  RVQTSPEEEESANRTRKDSLLRPAPVKPRGP 112
           R    P +  +   T ++S+  P P  P GP
Sbjct: 236 RFDQPPSKRMALTSTARESVPAPLPSPPSGP 266


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 37  RRRGERQPNKKRL 75
           RRRGER P  KR+
Sbjct: 65  RRRGERIPPSKRI 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,599
Number of Sequences: 5004
Number of extensions: 7506
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)