Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13m11
(134 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 28 0.79
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 28 1.0
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 28 1.0
AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical ... 26 4.2
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 25 5.6
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 25 5.6
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 25 5.6
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 25 5.6
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 25 5.6
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 25 5.6
Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 25 7.4
U10438-14|ABB88242.1| 441|Caenorhabditis elegans Hypothetical p... 25 7.4
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 25 7.4
AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of... 25 7.4
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 25 9.8
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 25 9.8
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 25 9.8
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 25 9.8
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 25 9.8
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 25 9.8
U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type chlo... 25 9.8
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 25 9.8
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 25 9.8
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 25 9.8
AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical ... 25 9.8
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 25 9.8
AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride ... 25 9.8
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 25 9.8
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ... 25 9.8
AF077536-4|AAK31409.1| 726|Caenorhabditis elegans Hypothetical ... 25 9.8
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 25 9.8
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 25 9.8
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 16 PTSPDLSRRRGERQPNKKRLAPT 84
PTS +LSRR ++QP K R T
Sbjct: 1122 PTSTNLSRRHTDKQPQKLRFTTT 1144
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 3 SRQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKKK 134
S ++ DE+ + K+R+ T + +T S L S E+R + K K
Sbjct: 827 SEKKEDENGDKKTKKRSSTSRRRTLSDHLEDSDKEERASRSKTK 870
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 3 SRQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKKK 134
S ++ DE+ + K+R+ T + +T S L S E+R + K K
Sbjct: 827 SEKKEDENGDKKTKKRSSTSRRRTLSDHLEDSDKEERASRSKTK 870
>AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical
protein K10G6.4 protein.
Length = 455
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 3 SRQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDR 113
S ++AD SR ++++ R E E Y + S EDR
Sbjct: 331 SLEKADRSRQIEEEHRERLELEVKSLYEKLQKSAEDR 367
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 8 TASRRVQTSPEEEESANRTRKDSLLRPAPVKPRGP 112
TAS VQ E+++ T + RP P +P P
Sbjct: 663 TASEPVQELSPTPEASSSTGTSAPARPPPARPEAP 697
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 3 SRQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDR 113
SR+R+ E + + R+P E++++ S + RS R
Sbjct: 136 SRERSRERERTRSRSRSPQERDRSHSKSRSRSRSRSR 172
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDSLLRPAPVKPRGPCERHKK 130
FE +T + E +R R S R PR HKK
Sbjct: 589 FEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 631
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDSLLRPAPVKPRGPCERHKK 130
FE +T + E +R R S R PR HKK
Sbjct: 675 FEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 717
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDSLLRPAPVKPRGPCERHKK 130
FE +T + E +R R S R PR HKK
Sbjct: 677 FEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 719
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 16/43 (37%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDSLLRPAPVKPRGPCERHKK 130
FE +T + E +R R S R PR HKK
Sbjct: 675 FEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDRSREHKK 717
>Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical
protein T15H9.5 protein.
Length = 173
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 12 RADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKKK 134
+AD + PL K + ++++ + SH+D A KK+
Sbjct: 106 KADNNEPLVKNLKIAKKEQEEENPKTDLESHKDEAEAKKKE 146
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 14 SRRVQTSPEEEESANRTRKDSLLRPAPVKPRGPCERHK 127
+RR + + NR+R+DS P +P P R K
Sbjct: 183 TRRDRHDSDNSPPRNRSRRDSDNSPPRRRPSSPARRRK 220
>U10438-14|ABB88242.1| 441|Caenorhabditis elegans Hypothetical
protein B0280.11 protein.
Length = 441
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 15 ADESRPLQKKRRAPTEQEKTRSYALRRS 98
AD+ + ++ R APT +E+T + R+S
Sbjct: 15 ADKFKKKKRSRSAPTSKERTSEISKRKS 42
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 6 RQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKKK 134
+Q++DE +++KRR E+E+ A + + +R IK+K
Sbjct: 940 QQKSDELAEIERKRRESEEKERLEIEAKKEA---ERQREIKRK 979
>AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of
mec and unc defectsprotein 2 protein.
Length = 547
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 3 SRQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKKK 134
SR+ +++R Q++ R EQE+ R R + + K+K
Sbjct: 377 SRREEEQNRREQQRERERAEQERRREREKEREQEKAKEREKKRK 420
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 37 RRRGERQPNKKRLAPTPCAGQATRTV*TP*KK 132
RRR RQ +AP P AG V P K+
Sbjct: 34 RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKR 65
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 37 RRRGERQPNKKRLAPTPCAGQATRTV*TP*KK 132
RRR RQ +AP P AG V P K+
Sbjct: 34 RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKR 65
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 14 SRRVQTSPEEEESANRTRKDSLLRPAPVKPRG 109
+RR ++ +R R+D+ RP PV+ G
Sbjct: 75 NRRDDRRDHRDDRGDRDRRDNFRRPDPVREDG 106
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 38 EEEESANRTRKDSLLRPAPVKPRGP 112
++ ES RK +L APVK +GP
Sbjct: 61 QKAESGTFVRKTTLSSNAPVKEKGP 85
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +2
Query: 14 SRRVQTSPEEEESANR----TRKD-SLLRPAPVKPRGP 112
+++ T P+ E +A+ + KD L + APVKPR P
Sbjct: 700 AKKAPTKPDSEAAADPVSGPSSKDPKLAKKAPVKPRDP 737
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 9 QRADESRPLQKKRRAPTEQEKTRSYALRR 95
+R P K+RR P+E+ + RS + RR
Sbjct: 151 ERKRRRSPSPKRRRRPSEKPRKRSRSPRR 179
>U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform b protein.
Length = 811
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDS 76
F A+RR++ E+EES + R++S
Sbjct: 694 FAEATRRIKQRLEDEESERKRREES 718
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDS 76
F A+RR++ E+EES + R++S
Sbjct: 623 FAEATRRIKQRLEDEESERKRREES 647
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 9 QRADESRPLQKKRRAPTEQEKTRSYALRR 95
+R P K+RR P+E+ + RS + RR
Sbjct: 151 ERKRRRSPSPKRRRRPSEKPRKRSRSPRR 179
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 38 EEEESANRTRKDSLLRPAPVKPRGP 112
++ ES RK +L APVK +GP
Sbjct: 61 QKAESGTFVRKTTLSSNAPVKEKGP 85
>AL032643-4|CAA21662.1| 436|Caenorhabditis elegans Hypothetical
protein Y54E5A.6 protein.
Length = 436
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 37 RRRGERQPNKKRLAPTPCAGQATRTV 114
RRR ERQP+K R+ QA +++
Sbjct: 179 RRRDERQPDKCRIDEIRDVAQAVQSI 204
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDS 76
F A+RR++ E+EES + R++S
Sbjct: 623 FAEATRRIKQRLEDEESERKRREES 647
>AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 811
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 2 FETASRRVQTSPEEEESANRTRKDS 76
F A+RR++ E+EES + R++S
Sbjct: 694 FAEATRRIKQRLEDEESERKRREES 718
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +3
Query: 6 RQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKKK 134
R+++ + + +K++ +++++T S + S E+R KKK
Sbjct: 101 RKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKK 143
>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform b protein.
Length = 1144
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +3
Query: 6 RQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVN 119
+Q++DE +++KRR E+E+ A + + + ++
Sbjct: 940 QQKSDELAEIERKRRESEEKERLEIEAKKEAERQREID 977
>AF077536-4|AAK31409.1| 726|Caenorhabditis elegans Hypothetical
protein C16A11.3 protein.
Length = 726
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 39 KKRRAPTEQEKTRSYALRRSSHEDRVN 119
K+ RAP EQ + +RR S D N
Sbjct: 343 KRTRAPKEQNPSEIKKIRRKSETDNEN 369
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 47 ESANRTRKDSLLRPAPVKPRG 109
+ NR K +L P P +PRG
Sbjct: 39 DPTNRLSKREILPPVPTRPRG 59
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +3
Query: 6 RQRADESRPLQKKRRAPTEQEKTRSYALRRSSHEDRVNAIKKK 134
R+++ + + +K++ +++++T S + S E+R KKK
Sbjct: 101 RKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKK 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,430
Number of Sequences: 27780
Number of extensions: 46150
Number of successful extensions: 392
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 25
effective length of database: 12,045,698
effective search space used: 228868262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -