Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13m11
(134 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 0.77
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 1.4
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 1.8
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 20 3.1
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 19 4.1
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 19 4.1
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 19 4.1
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 19 4.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 19 7.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 18 9.5
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 18 9.5
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 18 9.5
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.8 bits (44), Expect = 0.77
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +1
Query: 43 RGERQPNKKRLAPTP---CAGQATRTV*TP 123
RGE P +P+P CA T T +P
Sbjct: 733 RGEASPRSPNASPSPAEQCASTTTITARSP 762
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.0 bits (42), Expect = 1.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -2
Query: 118 FTRSSWLDRRRA*E---RVFSCSVGALLFFWR 32
+ R SW+DRR A + + S+ L W+
Sbjct: 56 YFRQSWVDRRLAFQGGKETLALSISMLARIWK 87
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 20.6 bits (41), Expect = 1.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 14 SRRVQTSPEEEESANRTRKDSLLRP 88
S R T P+E SA R + LRP
Sbjct: 628 SCRQGTVPDETHSACRDIPEEFLRP 652
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 19.8 bits (39), Expect = 3.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 13 EPTSPDLSRRRGERQPNKKRLA 78
E T P +S+ QP +RLA
Sbjct: 728 ERTQPTMSQMPPTAQPRMERLA 749
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +1
Query: 25 PDLSRRRGERQPNKKRLAPTP 87
PDL G P ++L P P
Sbjct: 1637 PDLRDELGYIAPPNRKLPPVP 1657
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 72 SFLVRLALSSSSGEVWT 22
SFL +A SSG ++T
Sbjct: 19 SFLFVIAAQDSSGRIFT 35
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 72 SFLVRLALSSSSGEVWT 22
SFL +A SSG ++T
Sbjct: 19 SFLFVIAAQDSSGRIFT 35
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 72 SFLVRLALSSSSGEVWT 22
SFL +A SSG ++T
Sbjct: 19 SFLFVIAAQDSSGRIFT 35
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 18.6 bits (36), Expect = 7.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Frame = +3
Query: 24 SRPLQKKRRAPTEQEKTRSYALRRSSHED 110
SRP K+ R + +K SH D
Sbjct: 347 SRPSDKEEREAQKSQKPSPVTGASKSHGD 375
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 18.2 bits (35), Expect = 9.5
Identities = 5/7 (71%), Positives = 7/7 (100%)
Frame = +2
Query: 113 CERHKKK 133
CERH+K+
Sbjct: 297 CERHQKR 303
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 18.2 bits (35), Expect = 9.5
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 110 PCERHKK 130
P ERHKK
Sbjct: 207 PAERHKK 213
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 18.2 bits (35), Expect = 9.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 55 QPNKKRLAPTPCAGQATRTV*TP 123
Q +KK+L+P G + TP
Sbjct: 268 QISKKKLSPATPKGSKCSMITTP 290
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,746
Number of Sequences: 438
Number of extensions: 566
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 25
effective length of database: 135,393
effective search space used: 2572467
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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