Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m08
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   4.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    24   5.3  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    24   7.0  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    23   9.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   9.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   9.2  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 90  QIFSKSLLQVLLCSRLIIFLSYNAII 13
           +IF   ++ VL CSRL+  +S + ++
Sbjct: 406 EIFLNGVVSVLACSRLVFAVSRDGVL 431


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   LIIIALYDKKIINLLQSKTCKRLFEKI 88
           ++ I  YD   +  +  KTC++L EKI
Sbjct: 362 IVEICRYDIDSVRSVALKTCEKLMEKI 388


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 180 YNCYYTDNSDYRRCRLCRLDATRRRNK 100
           +N +Y D     R    R++ TRR+NK
Sbjct: 426 FNVFYPDLIGTGRAPTYRIERTRRKNK 452


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 171 YYTDNSDYRRCRLCRLDATRRRNKIN 94
           YY ++ +Y      +LD T R NK N
Sbjct: 571 YYRESKEYIASLYEKLDRTERNNKEN 596


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 297 KIYSQQHQHMFKSLYK 250
           +++SQ HQ M  S+YK
Sbjct: 816 RVHSQDHQSMSDSMYK 831


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 2    KLLIIIALYDKKIINLLQSKTCKRLFEKIC 91
            K+ ++  L D K++      TCK L   IC
Sbjct: 1217 KIQLLSELKDMKLLGASDVDTCKSLKRSIC 1246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,389
Number of Sequences: 5004
Number of extensions: 18260
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)