Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13m08
(334 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC126112-1|AAI26113.1| 1237|Homo sapiens Ras protein-specific gu... 29 3.4
AF181250-1|AAD55268.1| 1237|Homo sapiens Ras guanine nucleotide ... 29 3.4
AF023130-1|AAB80953.1| 1237|Homo sapiens Ras-GRF2 protein. 29 3.4
U60800-1|AAC50810.1| 862|Homo sapiens semaphorin protein. 29 4.5
BC054500-1|AAH54500.1| 862|Homo sapiens sema domain, immunoglob... 29 4.5
AL929575-4|CAI43250.2| 862|Homo sapiens sema domain, immunoglob... 29 4.5
AL590233-3|CAI17379.2| 862|Homo sapiens sema domain, immunoglob... 29 4.5
AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens ... 29 4.5
AB210030-1|BAE06112.1| 870|Homo sapiens SEMA4D variant protein ... 29 4.5
AK124805-1|BAC85954.1| 189|Homo sapiens protein ( Homo sapiens ... 28 6.0
AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens ... 28 7.9
>BC126112-1|AAI26113.1| 1237|Homo sapiens Ras protein-specific
guanine nucleotide-releasing factor 2 protein.
Length = 1237
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 97 KLANFFKKPFTSFTLQQVNNFFVIQCNN 14
KL++ +K+PFTS ++ + FF NN
Sbjct: 681 KLSDIYKRPFTSIPVRSLELFFATSQNN 708
>AF181250-1|AAD55268.1| 1237|Homo sapiens Ras guanine nucleotide
exchange factor 2 protein.
Length = 1237
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 97 KLANFFKKPFTSFTLQQVNNFFVIQCNN 14
KL++ +K+PFTS ++ + FF NN
Sbjct: 681 KLSDIYKRPFTSIPVRSLELFFATSQNN 708
>AF023130-1|AAB80953.1| 1237|Homo sapiens Ras-GRF2 protein.
Length = 1237
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 97 KLANFFKKPFTSFTLQQVNNFFVIQCNN 14
KL++ +K+PFTS ++ + FF NN
Sbjct: 681 KLSDIYKRPFTSIPVRSLELFFATSQNN 708
>U60800-1|AAC50810.1| 862|Homo sapiens semaphorin protein.
Length = 862
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 303 KFKIYSQQHQHMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 169
K I + H K++Y K + N+ L ++ F + LC+ YNCY
Sbjct: 711 KIVINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756
>BC054500-1|AAH54500.1| 862|Homo sapiens sema domain,
immunoglobulin domain (Ig), transmembrane domain (TM)
and short cy protein.
Length = 862
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 303 KFKIYSQQHQHMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 169
K I + H K++Y K + N+ L ++ F + LC+ YNCY
Sbjct: 711 KIVINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756
>AL929575-4|CAI43250.2| 862|Homo sapiens sema domain,
immunoglobulin domain (Ig), transmembrane domain (TM)
and short cy protein.
Length = 862
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 303 KFKIYSQQHQHMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 169
K I + H K++Y K + N+ L ++ F + LC+ YNCY
Sbjct: 711 KIVINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756
>AL590233-3|CAI17379.2| 862|Homo sapiens sema domain,
immunoglobulin domain (Ig), transmembrane domain (TM)
and short cy protein.
Length = 862
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 303 KFKIYSQQHQHMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 169
K I + H K++Y K + N+ L ++ F + LC+ YNCY
Sbjct: 711 KIVINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756
>AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens
cDNA FLJ46559 fis, clone THYMU3040126. ).
Length = 303
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 294 IYSQQHQHMFKSLYKFNYNKT-LCTIIWVFILQHLCI*NYNCYYT 163
+Y+ + + + +Y Y+ T + T ++V + H+CI Y C YT
Sbjct: 19 VYTHTYIYTYTCMYVCIYSHTYIHTHVYVCVHIHICIHMYMCVYT 63
>AB210030-1|BAE06112.1| 870|Homo sapiens SEMA4D variant protein
protein.
Length = 870
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 303 KFKIYSQQHQHMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 169
K I + H K++Y K + N+ L ++ F + LC+ YNCY
Sbjct: 719 KIVINTVPQLHSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 764
>AK124805-1|BAC85954.1| 189|Homo sapiens protein ( Homo sapiens
cDNA FLJ42815 fis, clone BRCAN2014143. ).
Length = 189
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 273 HMFKSLYKFNYNKTLCTIIWVFILQHLCI*NYNCYYTDNSDYRRCRLC 130
H++ +Y Y +C + V++ H C+ C YT R R C
Sbjct: 66 HVYAYMYVRTYIHIMCMHVCVYVCVHACMCVCTCAYTHVFVCVRVRTC 113
>AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ42813 fis, clone BRCAN2012355. ).
Length = 180
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -2
Query: 288 SQQHQHMFKSLYKFNYNKTLCTIIWVFILQHLCI*NYNCYYTDNSDYRRCRLC 130
+++H + K +Y + Y T +V + H+C+ Y C YT +C
Sbjct: 43 TRKHMYTHKHMYVYTYIYVY-TYTYVCVHIHICVHIYLCMYTHTYMCAHIHMC 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,033,167
Number of Sequences: 237096
Number of extensions: 480336
Number of successful extensions: 1022
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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