Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m07
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...   128   8e-31
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    33   0.041
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    29   0.50 
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   2.7  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     27   2.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   4.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   4.7  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.1  

>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  128 bits (309), Expect = 8e-31
 Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
 Frame = +1

Query: 115 MSDWDTVTIL--RKKP-PKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA 285
           MSDWDTVT +  R  P  +    KT+  +N+ARR G  V T++KY  G   Q    ++  
Sbjct: 1   MSDWDTVTKIGSRAGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNKSQDPAGQHLT 60

Query: 286 KLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNI 465
           K+DRE E          + + I +GRQAKG +QKDL+ +I EKPQ+VNDYE+GR IPN  
Sbjct: 61  KIDRENEVKPPSTTGRSVAQAIQKGRQAKGWAQKDLSQRINEKPQVVNDYESGRAIPNQQ 120

Query: 466 VLGKIERAIGIKLRGK 513
           VL K+ERA+GIKLRG+
Sbjct: 121 VLSKMERALGIKLRGQ 136


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 142 LRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTN-KQHVTTKNTAKLDRETEELRH 318
           + K   K    K  +A N   R+G+P   +++   G N     T+ NT   D  + +LR 
Sbjct: 439 MSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRL 498

Query: 319 EKIPL 333
           EKI L
Sbjct: 499 EKILL 503


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 118 SDWDTVTILR-KKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 294
           ++W  + + +  +   ASA K   A  +   QG+PVDTQ++  A      V  K     D
Sbjct: 147 ANWSALAVAQFLRGEYASAYKIVDAFESTINQGVPVDTQEESEAMLFMNLVILKKDGVED 206

Query: 295 RETEELRHEKIPLD 336
                L  EK  LD
Sbjct: 207 AYKHLLSIEKKVLD 220


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 521 ANHCSLLADRNNGIPWEAKTLLRFIY 598
           AN CS+ A  +N + W+  T  RF Y
Sbjct: 57  ANFCSISATDDNALRWDKITYHRFAY 82


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 516 FFSTKFYSNCPFNFSKNNVIWNATTS 439
           F  T+  SNC F F  + V WN+  S
Sbjct: 203 FIVTQSESNCKFRFDFSKVYWNSRLS 228


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 498 YSNCPFNFSKNNVIWNATTSFI 433
           Y  C F+FSK+  +W     F+
Sbjct: 157 YQTCKFHFSKSQCVWTLYLEFL 178


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 143 RIVTVSQSDMLNVDHWYDKTKQEYYYW 63
           RI  V+Q+   ++ H  DKT  EY  W
Sbjct: 738 RIAYVAQAAFTHLGHHPDKTPSEYIQW 764


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 614 HLILAVACTLINWL*NMMXAFILFCLEISVRL 709
           HL++A A T+ NWL      F  FC ++ + L
Sbjct: 438 HLVIAPASTMENWL----REFAKFCPKLKIEL 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,430
Number of Sequences: 5004
Number of extensions: 53356
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)