Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m06
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0285 + 26922967-26923051,26923258-26923362,26924044-269240...    31   0.89 
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936           29   2.7  
08_02_1054 + 23980962-23981096,23981208-23981420,23983062-239831...    29   3.6  
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   4.7  

>05_06_0285 +
           26922967-26923051,26923258-26923362,26924044-26924072,
           26925078-26925224,26926402-26926632
          Length = 198

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 248 AYYICPHKVQMFCESNHEFDLDSASC 325
           AYY  PH++++ C S+ + +L S SC
Sbjct: 31  AYYSYPHRIRIKCSSSMDCNLSSCSC 56


>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
          Length = 838

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 550 AKDLMIM--SGNVSVHFINNLQKCRAHHKDIDIFKHLCPELQID 425
           A  LM+M  SG   + +++ L K      D+D+ KH+C  L ++
Sbjct: 548 ASSLMLMGRSGRCRLRWVSQLLKQGEKSWDVDLIKHVCHPLDVE 591


>08_02_1054 +
           23980962-23981096,23981208-23981420,23983062-23983157,
           23983420-23983565,23983679-23983898,23984502-23984561
          Length = 289

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 320 WPSPSRIRDLIHKTFAL 270
           WP+P R+RDLI +T +L
Sbjct: 45  WPAPDRVRDLIRRTRSL 61


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 275 QMFCESNHEFDLDSASCKPIVYDRTGSGCA 364
           QM+     E +  S  C+   Y RTG GCA
Sbjct: 4   QMWMRKEAEDERTSGGCEETAYARTGGGCA 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,098
Number of Sequences: 37544
Number of extensions: 332080
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)