Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13m06
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical... 30 1.4
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 30 1.4
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 30 1.4
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 30 1.4
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 30 1.4
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 3.2
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 3.2
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 29 4.3
U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine rece... 29 4.3
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 4.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 4.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 4.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 4.3
AF016426-2|AAB65345.1| 335|Caenorhabditis elegans Hypothetical ... 28 5.6
U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily ass... 28 7.4
>AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical
protein T08B2.5g protein.
Length = 695
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 641 FVCAQNLGSQKHKVRYGHASAHGQRTRQILRQGFND 534
FV LG+ K+R+G ++H ++TRQ L ++D
Sbjct: 659 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 694
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 641 FVCAQNLGSQKHKVRYGHASAHGQRTRQILRQGFND 534
FV LG+ K+R+G ++H ++TRQ L ++D
Sbjct: 802 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 837
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 641 FVCAQNLGSQKHKVRYGHASAHGQRTRQILRQGFND 534
FV LG+ K+R+G ++H ++TRQ L ++D
Sbjct: 830 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 865
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 641 FVCAQNLGSQKHKVRYGHASAHGQRTRQILRQGFND 534
FV LG+ K+R+G ++H ++TRQ L ++D
Sbjct: 888 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 923
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 641 FVCAQNLGSQKHKVRYGHASAHGQRTRQILRQGFND 534
FV LG+ K+R+G ++H ++TRQ L ++D
Sbjct: 889 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 924
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 281 FCESNHEFDLDSASCKPIVYDRTGSGCAARMYRN 382
FC +D CKP+ YD T +GC Y N
Sbjct: 1536 FCRQLEMYD----ECKPLPYDTTVTGCCCDNYNN 1565
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 281 FCESNHEFDLDSASCKPIVYDRTGSGCAARMYRN 382
FC +D CKP+ YD T +GC Y N
Sbjct: 1536 FCRQLEMYD----ECKPLPYDTTVTGCCCDNYNN 1565
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 182 CHSDKICPKGYFGLNADPYDCTAYYICPHKVQMFCESNHEFDLDSASCKPIVYDRTGSGC 361
C +IC G+ N P + P + M C +N ++ +SC+P D + C
Sbjct: 49 CFIGEICDNGFCCPNVLPTFSLQRELNP-TIAMVCGANEQYSACFSSCQPSCQDPSTPAC 107
Query: 362 AA 367
A
Sbjct: 108 PA 109
>U41263-6|AAC24432.1| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 26 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -3
Query: 510 ILLITYKNVARITKTLIYLNIYVPNCKSIIVLCN*KATLHNNKFLYMR 367
I++I+Y + KTLI NI+ +++++ C+ + +H + +R
Sbjct: 37 IIIISYYFFYLVVKTLIKNNIFSNCTRALLIFCSINSIVHQTTMMEVR 84
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 176 LKCHSDKICPKGYFGLNADPYDCTAYYICPHKVQMFC-ESNHEFD 307
LKC K CPK G D Y+C A C H QM C ++ EF+
Sbjct: 859 LKC--SKECPKDGCG---DGYECDAAIGCCHVDQMSCGKAKQEFE 898
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 176 LKCHSDKICPKGYFGLNADPYDCTAYYICPHKVQMFC-ESNHEFD 307
LKC K CPK G D Y+C A C H QM C ++ EF+
Sbjct: 859 LKC--SKECPKDGCG---DGYECDAAIGCCHVDQMSCGKAKQEFE 898
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 176 LKCHSDKICPKGYFGLNADPYDCTAYYICPHKVQMFC-ESNHEFD 307
LKC K CPK G D Y+C A C H QM C ++ EF+
Sbjct: 859 LKC--SKECPKDGCG---DGYECDAAIGCCHVDQMSCGKAKQEFE 898
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 176 LKCHSDKICPKGYFGLNADPYDCTAYYICPHKVQMFC-ESNHEFD 307
LKC K CPK G D Y+C A C H QM C ++ EF+
Sbjct: 859 LKC--SKECPKDGCG---DGYECDAAIGCCHVDQMSCGKAKQEFE 898
>AF016426-2|AAB65345.1| 335|Caenorhabditis elegans Hypothetical
protein W07B8.4 protein.
Length = 335
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 383 SFYTCEPHTRCPCDRTR*ACSWPS-PSRIRD 294
S Y C+P++ PC T +WP P +I D
Sbjct: 170 SQYGCKPYSIAPCGETIDGVTWPECPMKISD 200
>U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily
assigned gene nameprotein 340 protein.
Length = 447
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 610 STRSVTG-MLAHTDNGPDKFYAKDLMIMSGNVSVHFINNLQKCR 482
+T+ + G M+AH DN D +Y+ M G +S +L+K +
Sbjct: 310 NTQVIEGKMIAHLDNATDLYYSVSAPAMRGYISSRDFLDLRKIK 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,249
Number of Sequences: 27780
Number of extensions: 309963
Number of successful extensions: 773
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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