Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m02
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0509 - 11064209-11064470,11065945-11066132,11066249-110664...    27   1.6  
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539...    25   6.3  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    25   6.3  
09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474...    25   8.3  

>02_02_0509 -
           11064209-11064470,11065945-11066132,11066249-11066493,
           11066816-11066987,11067090-11067496,11068443-11068587
          Length = 472

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -1

Query: 203 LQHVLIIEDYAHKLNAINI*WAQA-SMDNLNVAIHFETKVSIILFSSCLALQI*THDCFA 27
           L+H+++IED   +L+A+N  +     +   NV    +T  +I+L S  +ALQ   H  FA
Sbjct: 350 LKHLIMIEDPEERLSALNDAFTPGPELQGDNV----DTLYTIMLESIAMALQKDIHLAFA 405

Query: 26  VDIGQ 12
           + + +
Sbjct: 406 LPLSE 410


>03_06_0140 +
           31951569-31951710,31951943-31952037,31952141-31953982,
           31954065-31954179,31954260-31954897
          Length = 943

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  SEAVVRLYLKSETTAE-QYN*DFCLKMDGDIQIVHTS 134
           +EA+V + + + T  + QY  D  +++DGDI+ ++ S
Sbjct: 822 TEAIVEVSMANTTNMKLQYLDDLIMELDGDIESLNIS 858


>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
            5368467-5368577,5368997-5369068,5369719-5369737,
            5369838-5371142,5371317-5371397,5372441-5372604,
            5373363-5373466,5373537-5373628,5374079-5374216,
            5374370-5374426,5374820-5375046
          Length = 1713

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 105  DGDIQIVHTSLGPLNVYCI*LVCIVFN 185
            + D+Q++HT LG L +  I L+C ++N
Sbjct: 1562 ESDLQLLHTYLGDLKL--IKLICWIWN 1586


>09_04_0493 -
           18046553-18046990,18047061-18047180,18047290-18047478,
           18047596-18047739,18048673-18048900,18049659-18049838,
           18050304-18050399,18051096-18051262,18051356-18051773,
           18052335-18052517,18053846-18053953,18054053-18054246,
           18054503-18054662
          Length = 874

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 94  QKSQLYCSAVVSLFKYKRTTASLLT 20
           QKS LYC A+ +L K K T  ++ T
Sbjct: 609 QKSDLYCIALHALVKAKDTHKAIKT 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,293,574
Number of Sequences: 37544
Number of extensions: 76645
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)