Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13m02
         (218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80952-5|AAB38092.1|  424|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U29488-2|AAA68774.2|  422|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>U80952-5|AAB38092.1|  424|Caenorhabditis elegans Hypothetical
           protein F54H5.2 protein.
          Length = 424

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 90  FCLKMDGDIQIVHTSLGPLNV 152
           FCLK   DI  +H  L P N+
Sbjct: 137 FCLKQIHDIGFIHRDLKPANM 157


>U29488-2|AAA68774.2|  422|Caenorhabditis elegans Hypothetical
           protein C56C10.6 protein.
          Length = 422

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 90  FCLKMDGDIQIVHTSLGPLNV 152
           FCLK   DI  +H  L P N+
Sbjct: 130 FCLKQIHDIGFIHRDLKPANM 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,857,423
Number of Sequences: 27780
Number of extensions: 75525
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)