Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l22
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.50 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.50 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.6  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.6  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.6  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   6.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   6.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   6.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   6.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 490 TQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEIT 606
           T+HS L+    EV+ E    Q + R      IQR+ +IT
Sbjct: 427 TEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDIT 465


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 490 TQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEIT 606
           T+HS L+    EV+ E    Q + R      IQR+ +IT
Sbjct: 133 TEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDIT 171


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 367 PQVHASFFHLTVALIRW 317
           P VH    HLTVA++++
Sbjct: 905 PDVHQGQIHLTVAVVQY 921


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E+  R   E    RS+D+K+
Sbjct: 44  EREKKSYKNENSYRKYRETSKERSRDRKE 72


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E+  R   E    RS+D+K+
Sbjct: 44  EREKKSYKNENSYRKYRETSKERSRDRKE 72


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E+  R   E    RS+D+K+
Sbjct: 44  EREKKSYKNENSYRKYRETSKERSRDRKE 72


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E+  R   E    RS+D+K+
Sbjct: 44  EREKKSYKNENSYRKYRETSKERSRDRKE 72


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E+  R   E    RS+D+K+
Sbjct: 44  EREQKSYKNENSYRKYRETSKERSRDRKE 72


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E+  R   E    RS+D+K+
Sbjct: 277 EREQKSYKNENSYRKYRETSKERSRDRKE 305


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E+  R   E    RS+D+K+
Sbjct: 277 EREKKSYKNENSYRKYRETSKERSRDRKE 305


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E   R   E    RS+D+K+
Sbjct: 44  EREQKSYKNEREYREYRETSRERSRDRKE 72


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E   R   E    RS+D+K+
Sbjct: 44  EREQKSYKNEREYREYRETSRERSRDRKE 72


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E   R   E    RS+D+K+
Sbjct: 44  EREQKSYKNEREYREYRETSRERSRDRKE 72


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E   R   E    RS+D+K+
Sbjct: 44  EREQKSYKNEREYREYRETSRERSRDRKE 72


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E   R   E    RSQD+ +
Sbjct: 44  EREQKSYKNEREYRKYRETSKERSQDRTE 72


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 405 QRKIKTYRTEHRTRGALEQIVGRSQDKKD 491
           +R+ K+Y+ E   R   E    RSQD+ +
Sbjct: 44  EREQKSYKNEREYRKYRETSKERSQDRTE 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,156
Number of Sequences: 438
Number of extensions: 2510
Number of successful extensions: 23
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)