Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l14
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.51 
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.8  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    26   4.8  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   8.4  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 433 GISVMPTGILPGRASSTVTFIKFIGLMLFEKASN--MPTFLVLSCKLTHPSIVSER 272
           G + +P+G L   +SS  +  K  G  LFE ASN   P+  + S  +   SI S R
Sbjct: 190 GAASLPSGGLSNLSSSLRSSSKSAGFSLFESASNSFTPSSFIESANMESLSIPSRR 245


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = +3

Query: 342 FSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNI 521
           FSN +   N++NVTV +  PG I    T + F+  + +     P  P  +  +H   V+ 
Sbjct: 695 FSNKVVKDNVVNVTVTVEHPGLI---WTVVSFDADVLSWSL--PEVPSTVRRHHVREVSA 749

Query: 522 MYTLKCNMKRSFLNKPLF 575
                 +   S+L  P++
Sbjct: 750 YGLDSYSFNMSYLEAPIY 767


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 650 GHLAPHTLLYWAFLMSILYKELASG 576
           G L  ++LL+W  LM +LY  +  G
Sbjct: 80  GKLRNNSLLFWKSLMGLLYSTMVCG 104


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 432 PFEMPLRARQAVSPGYPGLLETYHG 506
           P+  P  +   ++P Y G L  YHG
Sbjct: 518 PYLQPYNSASQLAPSYVGSLPQYHG 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,694
Number of Sequences: 5004
Number of extensions: 58229
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)