Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l12
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    30   0.36 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    28   1.1  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    28   1.5  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   3.4  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   4.5  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +3

Query: 366 KDVNLSWRILHQITDQIIVHLS----VVGHCFEEKAKL 467
           +D N++W I+H+I  +++  +S    +  +CF +K K+
Sbjct: 197 EDSNMAWSIIHKIKTEVVAPISEKKELKNYCFTQKRKI 234


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/97 (23%), Positives = 37/97 (38%)
 Frame = +2

Query: 119 HIKMMNDTDKYTMHEVEKRIGVNRKYNHYINITLILFVFVQLLRISTAFNVRPTGCTQNE 298
           H  ++ND DK   H      G+   Y  Y       F++   LR   A       C+   
Sbjct: 454 HFHLLNDHDKCFWHT-----GMASSYEDYT----ATFIYGLYLRHGLA-------CSPKT 497

Query: 299 QCTAGYYCNTYTYVCNKCINCQQGREFVMENTTPNNR 409
             +  +   T T + NK + C    +  + +TTPN +
Sbjct: 498 HVSFLFLLKTATQLLNKLVECLHSSDLGLNDTTPNEK 534


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 417 IVHLSVVGH--CFEEKAKLIEVWLIQQWTV*HYESL 518
           + H +VVG     EE  K+++ W +  W   HY  +
Sbjct: 251 LFHGNVVGKFLVLEENKKIVQTWRLSSWPTGHYAEI 286


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 452 RESKADRSMANTTMDGLTLRELNVSKYVN 538
           RES+   SM +T + G    E NVS  +N
Sbjct: 99  RESETSSSMKSTALVGTVAHECNVSPVIN 127


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 312 PAVH-CSF*VHPVGRTLNAVEIRSNCTKTNNINVM 211
           P VH C F + P G  ++A+E+R        +N++
Sbjct: 205 PRVHACIFFIQPTGHAISAMELRVMLALHEKVNII 239


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 221 LTLCLCNDCTFCSHQYVSQLRALCI 147
           L+L +C D   CS+ Y + L  LC+
Sbjct: 166 LSLKICTDVLICSNDYKNALWILCL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,967
Number of Sequences: 5004
Number of extensions: 58316
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)