Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l12
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667     31   1.1  
02_04_0142 + 20167876-20169108                                         28   6.1  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    28   6.1  
03_05_0513 - 25073518-25073623,25073719-25073777,25074048-250741...    28   8.1  

>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
          Length = 569

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/90 (23%), Positives = 32/90 (35%)
 Frame = +2

Query: 248 RISTAFNVRPTGCTQNEQCTAGYYCNTYTYVCNKCINCQQGREFVMENTTPNNRSNNCTS 427
           ++S A      G    EQ +A    +  + VC  C      R  ++        +  C  
Sbjct: 381 QLSVAIKDVLNGQRIGEQASASSSVDVDSVVCKNCKRYISNRTSLLHEAYCVRHNVVCMH 440

Query: 428 FGCGPLLRRESKADRSMANTTMDGLTLREL 517
            GCG +LR+E   D    N        RE+
Sbjct: 441 DGCGVVLRKEEATDHVHCNKCGQAFQQREM 470


>02_04_0142 + 20167876-20169108
          Length = 410

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 350 IYYKHMCMYYNNNQLCI 300
           ++Y+ MC Y+N N++C+
Sbjct: 213 LHYEEMCSYHNRNKMCL 229


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 628 KLLHSTQSTKENKTNHNASTSRDNPN 551
           +LL STQS KE KT  N   S  +PN
Sbjct: 204 RLLSSTQSLKEFKTQVNTLASLQHPN 229


>03_05_0513 -
           25073518-25073623,25073719-25073777,25074048-25074185,
           25074719-25074982,25075062-25075306,25075874-25076081
          Length = 339

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 215 LCLCNDCTFCSHQYVSQL--RALCICPCHSS 129
           +C CN CT C   + ++L   A  I  C SS
Sbjct: 62  ICKCNSCTLCDQMFFTELTKEASEIAGCFSS 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,066
Number of Sequences: 37544
Number of extensions: 329605
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)