Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13l12
(694 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT007407-1|AAP36075.1| 959|Homo sapiens rho/rac guanine nucleot... 31 5.2
BC020567-1|AAH20567.1| 959|Homo sapiens ARHGEF2 protein protein. 31 5.2
AL512715-1|CAC21656.1| 958|Homo sapiens hypothetical protein pr... 31 5.2
AL355388-10|CAH72630.1| 985|Homo sapiens rho/rac guanine nucleo... 31 5.2
AL355388-9|CAH72629.1| 986|Homo sapiens rho/rac guanine nucleot... 31 5.2
AL355388-8|CAH72628.1| 987|Homo sapiens rho/rac guanine nucleot... 31 5.2
AL355388-7|CAH72627.1| 958|Homo sapiens rho/rac guanine nucleot... 31 5.2
AK128348-1|BAC87394.1| 129|Homo sapiens protein ( Homo sapiens ... 31 5.2
AF486838-1|AAL96658.1| 985|Homo sapiens guanine nucleotide exch... 31 5.2
AB014551-1|BAA31626.3| 1114|Homo sapiens KIAA0651 protein protein. 31 5.2
BC142680-1|AAI42681.1| 937|Homo sapiens SMCR8 protein protein. 30 6.8
BC101117-1|AAI01118.1| 836|Homo sapiens SMCR8 protein protein. 30 6.8
BC101116-1|AAI01117.1| 836|Homo sapiens SMCR8 protein protein. 30 6.8
AF467440-1|AAL78337.1| 787|Homo sapiens Smith-Magenis syndrome ... 30 6.8
>BT007407-1|AAP36075.1| 959|Homo sapiens rho/rac guanine nucleotide
exchange factor (GEF) 2 protein.
Length = 959
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 24 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 82
Query: 506 LR 511
LR
Sbjct: 83 LR 84
>BC020567-1|AAH20567.1| 959|Homo sapiens ARHGEF2 protein protein.
Length = 959
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 24 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 82
Query: 506 LR 511
LR
Sbjct: 83 LR 84
>AL512715-1|CAC21656.1| 958|Homo sapiens hypothetical protein
protein.
Length = 958
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 24 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 82
Query: 506 LR 511
LR
Sbjct: 83 LR 84
>AL355388-10|CAH72630.1| 985|Homo sapiens rho/rac guanine
nucleotide exchange factor (GEF) 2 protein.
Length = 985
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 51 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 109
Query: 506 LR 511
LR
Sbjct: 110 LR 111
>AL355388-9|CAH72629.1| 986|Homo sapiens rho/rac guanine nucleotide
exchange factor (GEF) 2 protein.
Length = 986
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 51 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 109
Query: 506 LR 511
LR
Sbjct: 110 LR 111
>AL355388-8|CAH72628.1| 987|Homo sapiens rho/rac guanine nucleotide
exchange factor (GEF) 2 protein.
Length = 987
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 52 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 110
Query: 506 LR 511
LR
Sbjct: 111 LR 112
>AL355388-7|CAH72627.1| 958|Homo sapiens rho/rac guanine nucleotide
exchange factor (GEF) 2 protein.
Length = 958
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 24 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 82
Query: 506 LR 511
LR
Sbjct: 83 LR 84
>AK128348-1|BAC87394.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ46490 fis, clone THYMU3027540. ).
Length = 129
Score = 30.7 bits (66), Expect = 5.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 377 IHVLVDNLCIYYKHMCMYYNNNQLCIVH 294
++V ++C+Y H+CMY + +CI H
Sbjct: 46 MYVYHTHICMYITHICMYITHIYVCISH 73
>AF486838-1|AAL96658.1| 985|Homo sapiens guanine nucleotide
exchange factor GEF-H1 protein.
Length = 985
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 51 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 109
Query: 506 LR 511
LR
Sbjct: 110 LR 111
>AB014551-1|BAA31626.3| 1114|Homo sapiens KIAA0651 protein protein.
Length = 1114
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 326 TYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMDGLT 505
T Y CNK I ++ N T +NR + T C + +++ KA NT + ++
Sbjct: 180 TMCYACNKSITAKEALICPTCNVTIHNRCKD-TLANCTKVKQKQQKAALLKNNTALQSVS 238
Query: 506 LR 511
LR
Sbjct: 239 LR 240
>BC142680-1|AAI42681.1| 937|Homo sapiens SMCR8 protein protein.
Length = 937
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 374 EFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMD 496
+F +EN P++R N+C F L A R ++ T++D
Sbjct: 629 DFSVENANPSSRDNSCEGFPAYELDPSHLLASRDISKTSLD 669
>BC101117-1|AAI01118.1| 836|Homo sapiens SMCR8 protein protein.
Length = 836
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 374 EFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMD 496
+F +EN P++R N+C F L A R ++ T++D
Sbjct: 629 DFSVENANPSSRDNSCEGFPAYELDPSHLLASRDISKTSLD 669
>BC101116-1|AAI01117.1| 836|Homo sapiens SMCR8 protein protein.
Length = 836
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 374 EFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMD 496
+F +EN P++R N+C F L A R ++ T++D
Sbjct: 629 DFSVENANPSSRDNSCEGFPAYELDPSHLLASRDISKTSLD 669
>AF467440-1|AAL78337.1| 787|Homo sapiens Smith-Magenis syndrome
chromosome region candidate 8 protein protein.
Length = 787
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 374 EFVMENTTPNNRSNNCTSFGCGPLLRRESKADRSMANTTMD 496
+F +EN P++R N+C F L A R ++ T++D
Sbjct: 629 DFSVENANPSSRDNSCEGFPAYELDPSHLLASRDISKTSLD 669
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,452,708
Number of Sequences: 237096
Number of extensions: 1930276
Number of successful extensions: 3560
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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