Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l11
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           30   1.8  
12_02_0414 + 18824347-18825161,18826018-18828229                       28   7.4  
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186...    28   7.4  
01_01_0964 + 7587369-7587529,7587857-7588184                           28   7.4  
04_01_0354 - 4646826-4647314                                           27   9.7  

>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 308 CR*PTKSHGNLVDAGCAGPVIMTNLGGAYV 397
           CR  T+    L DAG  GPV +T LG AY+
Sbjct: 77  CRVATRVTAALRDAGIRGPVDITALGDAYM 106


>12_02_0414 + 18824347-18825161,18826018-18828229
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 198 HNHTIIDHRLSDISLNCLGAGCMGRLLI 115
           + HT++DH LS + L+  G  C   LL+
Sbjct: 851 NEHTMLDHALSKLYLSYTGLSCEALLLL 878


>10_08_0015 +
           14116129-14116691,14116810-14117128,14117588-14118664,
           14118754-14119056
          Length = 753

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 189 TIIDHRLSDISLNCLGAGCMGRLLI*RNLRFVLQYGLFECSYT 61
           T+   RL+ +++  L  G +GR+ I  +L+ + Q  L EC ++
Sbjct: 605 TMSQERLNGLAIIALEGGMLGRINIKLSLKILFQETLKECRFS 647


>01_01_0964 + 7587369-7587529,7587857-7588184
          Length = 162

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 629 FFVAGRGFGSECNTAVVAVPSDFPLFAVLLKYLVDIIV 516
           FFVA     S C+  V+ VPS     A  L  + D+++
Sbjct: 55  FFVAANAAVSACSLVVLLVPSSTSKLAARLLLMADVVL 92


>04_01_0354 - 4646826-4647314
          Length = 162

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 318 GHRHTSYKGRLNLRYGFRWSTLENSSGPASICATH 214
           GH H  ++   +  +GF W  L+ S  P+S  +++
Sbjct: 12  GHLHQQHQRPWSCSFGFSWPPLQRSPPPSSSSSSY 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,901,723
Number of Sequences: 37544
Number of extensions: 369008
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)