Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l11
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.12 
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    26   0.36 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 288 LNLRYGFRWSTLENSSGPASICATHNESIVH-NHTIIDHRLSDISLN 151
           LN  Y  + +TL++ +G   I     ++I H  +TIID+R +D+S+N
Sbjct: 394 LNDLYNVK-NTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSIN 439


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 80  KPYCSTKRKFLYISNRPIQPAPKQLSEMSLKR*SIIV*LCTIDSL 214
           K YC T +  +Y  +    P PK   EM+ K  + +  +C ++ L
Sbjct: 64  KKYCETYKNSIYDVSMTFGPVPKFEGEMAEKISNELNEMCPLEKL 108


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 50  IKYQVYEHSNKPYCSTKRKFLYISNRPIQPAPKQLSEM 163
           I  ++ + SN P  +T  KF+ + N       KQ+SE+
Sbjct: 432 IANELEDASNIPVHATLEKFMILCNLMRTMNRKQISEL 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,886
Number of Sequences: 438
Number of extensions: 3806
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)