Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l10
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    26   2.2  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   5.0  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   5.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   6.6  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   6.6  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   6.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   6.6  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    24   8.7  

>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 318 NVTKMLDFYSQFNPSPLSIKQFIDFGGRHVLRLVK 422
           +V+K  D + +     LSI +  D  GR+VLR+ K
Sbjct: 355 DVSKYPDLFVKLAERGLSITELADIAGRNVLRVWK 389


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 403 CRPPKSMNCLMDNGEGLNCE*KSSIFVTFVKIAPANLIL 287
           CR   S N LM+N E        SIF++ +K  P   +L
Sbjct: 119 CRELHSCNVLMNNDEKNTLSLTPSIFLSVMKPCPKTSVL 157


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 407 HMSSAEVNELFDGQRRRVELRVEIKHFRHIRE 312
           H   A + E     RRR+++  E+   R IRE
Sbjct: 576 HRDPAHLTETLRSLRRRLDISAEVSIVRDIRE 607


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 430 FFSLTKRSTCRPPKSMNCLMDNGEGLNC 347
           F + T ++     KS++CL + G  LNC
Sbjct: 187 FIATTNKTYSLSGKSLSCLDNTGVSLNC 214


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 246 YYFSNT*IFLRETFKMRLAGAIFTNVTKMLDFYSQFNP 359
           YYF+NT   + E FK R     + +V   L F ++  P
Sbjct: 256 YYFNNTSSTISEEFKKRNKECQYDSVLNRLTFPTEQYP 293


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 73  YYLCSNSDGIRSLKLIT 23
           Y++C  SDGIR L  +T
Sbjct: 62  YFVCEKSDGIRCLLYMT 78


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 322 TFVKIAPANLILKVSRKNI*VLEK*YNNFNVIIHNHNRL*HIFHLS--EFLLFIPPQTTL 149
           +F  ++P N+   +  + + + E  + N+    HN  +L  +FHLS  E    I PQT +
Sbjct: 537 SFWPLSPNNVNFHLPEELVPLYEG-FQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNV 595


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 210 DCNTFFTCQNFCYLFRRKLRYNRVK 136
           D N+FF C+   +L   K+ Y++++
Sbjct: 44  DLNSFFDCEEELFLSANKIFYSKLR 68


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 118 YHCELMNECNFHGNLYYLCSNSD 50
           YH   + + ++H +L   CS SD
Sbjct: 651 YHSRALRDVSYHPSLPLFCSGSD 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,487
Number of Sequences: 5004
Number of extensions: 30031
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)