Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l09
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
 Frame = +3

Query: 135 QKLSAMLLNYKK-------SNKNVPNIKFDLKNLSFMLENTDKIDII 254
           QK+ +  L YKK       S   +P +KF+  N+  +    DK D +
Sbjct: 425 QKILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTL 471


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +3

Query: 153 LLNYKKSNKNVPNIKFDLKNLSFMLENTDKIDIIQFDDVKNYVQPAIVNLFESHNRS 323
           LL     N+NV N   +L++++F +   +  D+I+     N+      +   +HN++
Sbjct: 376 LLALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNHYNHNHNQA 432


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 654 EV*VYFVNSFGYFQYGIPPTDC 589
           ++ VY      + Q GIPPT C
Sbjct: 128 DISVYNSGDMTFDQTGIPPTTC 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,654
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)