Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l06
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59...    29   2.5  
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    29   3.3  
07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976           28   5.7  

>04_01_0058 +
           592846-593185,594641-595182,596298-596987,597078-597233,
           597277-597856,598601-598764,598907-599100,599702-599750,
           599777-599806
          Length = 914

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 390 LVGDSVVADSFSKIGSMSKLFDY*R*TAYIVP*SNEADSTIP 265
           LV     AD+  KI  + KLF +    +Y++P  N+A+ T P
Sbjct: 208 LVESITNADTEEKISVVDKLFQFETLQSYLIPAPNQAEVTAP 249


>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 585 DSTPLVPKWTVCTLLSATLLEGTFSSDV 502
           DS   V   T+C+LL+ATL+E  F+SD+
Sbjct: 373 DSISAVFVETICSLLAATLIELRFTSDL 400


>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
          Length = 562

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 31  IVNCTNWAWRSPAKHQLHQFS 93
           +V C  WAWR P K +L Q +
Sbjct: 482 VVFCFIWAWRDPVKFKLDQLT 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,743
Number of Sequences: 37544
Number of extensions: 383013
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)