Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l06
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical pr...    31   0.95 
AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.      31   0.95 
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    30   1.3  
Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical
           protein F09G8.9 protein.
          Length = 91

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -1

Query: 476 SFPLQWFDFHLVVRLDFSSSYFCVLFFHVWLE 381
           S+P ++FDF LV+ + F   + C+++  +W+E
Sbjct: 36  SYPTKYFDFLLVIIMTF--VFLCLVYLLIWIE 65


>AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.
          Length = 91

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -1

Query: 476 SFPLQWFDFHLVVRLDFSSSYFCVLFFHVWLE 381
           S+P ++FDF LV+ + F   + C+++  +W+E
Sbjct: 36  SYPTKYFDFLLVIIMTF--VFLCLVYLLIWIE 65


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 437 RLDFSSSYFCVL-FFHVWLETRWWQIHFLKLDPCPNYLTT 321
           RL   SS FC + F+ + L TRW     L + P  N LTT
Sbjct: 275 RLFTDSSIFCKIPFYSMRLHTRWQGSIVLNISPIANALTT 314


>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 163 SRRLCQNWVHNAHATVCVKCS*IVRARGVHRNGSRYCTICF 285
           +R  C++     +A VC KC+  V  + VH + + Y   CF
Sbjct: 65  NRIYCEHDFKTLYAPVCAKCNEFVIGQVVHSSNNSYHLACF 105


>Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical
           protein F29F11.3 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 181 NWVHNAHATVCVKCS*IVRARGVHRNGSRYCTICFIRLWYN 303
           N+V + +   CVKC    +  GV    + YC  CF+++  N
Sbjct: 5   NFVTDLNGKKCVKCDKDAKFTGVDPKKAWYCQECFVQMVRN 45


>Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical
           protein T11A5.1 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 245 PLALTIYEHFTHTVACALCTQF*HKRRDRVDSYT 144
           PL    Y +   T++C    ++ H+R + +D+YT
Sbjct: 316 PLCFVCYLYRLRTISCVAAKKYPHRRPNTIDTYT 349


>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +2

Query: 434 VEPPNENQTIVGERKKFLV-TTLSTSD--EKVPSSSVAESNVHTVHFGTRGVESQ 589
           +EP ++++ + G++  F+V TT S++D   K+P     ++  HT++   R   +Q
Sbjct: 70  IEPVDKDRRLKGQQLPFIVRTTYSSTDFESKMPKKQREKAGNHTINMDPRAEPTQ 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,057
Number of Sequences: 27780
Number of extensions: 356168
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)