Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13l02
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   2.6  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   3.4  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   4.5  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    24   6.0  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    24   6.0  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    24   7.9  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    24   7.9  

>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 225 RCGDFWLLGFPPGPVRPSLVN--LHFPDSSGESILTPGLVRTSSQHGPLSASESRPQTIL 52
           R  D  LL  P G     ++N  L     +G     PG     + +  +SAS S+P  I+
Sbjct: 474 RSFDRTLLILPGGSTGILIINDLLVIRSFAGSLGWLPGQSSVRTSNNAMSASASKPSDIV 533

Query: 51  RTRPPSSRI 25
           + RP  + +
Sbjct: 534 QPRPEQAML 542


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 125 VNMDSPEESGKCRLTKEGRTGPGGKPSSQKSP 220
           VN+  P ES     T++   GP  KP +  +P
Sbjct: 169 VNIKYPMESSDSSSTEQQLVGPSSKPFASTTP 200


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 168 VNLHFPDSSGESILTPGL 115
           VNL FP++ G S  TPG+
Sbjct: 731 VNLTFPENLGASYRTPGV 748


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 125 VNMDSPEESGKCRLTKEGRTGPGGKPSSQKSPHR 226
           +N+DSP E    RL +  R GP  K     S  R
Sbjct: 234 LNLDSPAELKHRRLVRSQRNGPLDKDLKPNSKIR 267


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 247 RPLSHYCPMRGLLA 206
           RP+S+YCP   L+A
Sbjct: 139 RPMSNYCPKSSLMA 152


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 201 GFPPGPVRPSLVNLHFPD 148
           GFP  P + S V+LHF D
Sbjct: 466 GFPYVPSQQSFVSLHFND 483


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 104 PVNMGHSAPVSPDLKPSSVPDLRVAELQETPR 9
           PVN G ++PVS +   ++  +L+ + +   PR
Sbjct: 55  PVNTGPTSPVSINASNAAPSNLKASYIPANPR 86


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 231 TARCGDFWLLGFPPGPVRPSL--VNLHFPDSSGESILT 124
           T RCG   + G     ++ SL  ++LH+P    ESIL+
Sbjct: 639 TYRCG---ICGITSQKIKSSLYIIDLHYPSQQLESILS 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,379
Number of Sequences: 5004
Number of extensions: 24996
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)