Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13k23
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   3.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.3  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 140 SASLDYGTIYAVYLQ*SNSLDMD 208
           +A + YGT++ +Y+Q S +  +D
Sbjct: 125 AAFISYGTLFFIYVQPSATFSLD 147


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 221 FLKLDPCPNYLTTEGKQHILYHN 153
           FL    C +  T+  K+H+L HN
Sbjct: 628 FLNNSMCTSTTTSPDKEHVLAHN 650


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 240 SLQPNMEKQNTKIRRRKIKSNHQ 308
           S+Q + + +NT I+ R+ + NH+
Sbjct: 474 SIQSHAKAKNTMIKARQYRLNHK 496


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 240 SLQPNMEKQNTKIRRRKIKSNHQ 308
           S+Q + + +NT I+ R+ + NH+
Sbjct: 474 SIQSHAKAKNTMIKARQYRLNHK 496


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 240 SLQPNMEKQNTKIRRRKIKSNHQ 308
           S+Q + + +NT I+ R+ + NH+
Sbjct: 100 SIQSHAKAKNTMIKARQYRLNHK 122


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 317 DFHLVVRLDFSSSYFCVLFFHVWLETRWWQIH 222
           DF L ++      Y   + FHV L+  W Q H
Sbjct: 63  DFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSH 94


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 269 VLFFHVWLETRWWQIHFLKLDPCPNYL 189
           +LF H       W I F K  P P +L
Sbjct: 484 LLFVHDTKNAGIWMIDFAKTLPLPQHL 510


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 269 VLFFHVWLETRWWQIHFLKLDPCPNYL 189
           +LF H       W I F K  P P +L
Sbjct: 399 LLFVHDTKNAGIWMIDFAKTLPLPQHL 425


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 269 VLFFHVWLETRWWQIHFLKLDPCPNYL 189
           +LF H       W I F K  P P +L
Sbjct: 718 LLFVHDTKNAGIWMIDFAKTLPLPQHL 744


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 231 PPPSLQPNMEKQNTKIRRRK 290
           PPP   P   K++ + RRR+
Sbjct: 394 PPPRQTPPSRKESGRRRRRR 413


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 405 LSATLLEGTFSSDVDNVVT 349
           L A  L+G F SD++ V T
Sbjct: 528 LEAIRLDGNFLSDINGVFT 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,189
Number of Sequences: 438
Number of extensions: 3492
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)