Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13k10
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    26   0.33 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    26   0.33 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.5  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 222 DNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDK--NHI--VAKLCDATRAK 368
           D+ +N+KK     LK++C+L       +I+  FD   NHI  + K+  +T  K
Sbjct: 20  DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 222 DNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDK--NHI--VAKLCDATRAK 368
           D+ +N+KK     LK++C+L       +I+  FD   NHI  + K+  +T  K
Sbjct: 3   DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 55


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 24  YAPYTHRVDII-NMDQFEQLI 83
           Y PYT RV+I+ ++D+ + L+
Sbjct: 468 YDPYTQRVEILDSVDRLDNLM 488


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 96  LKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIH 221
           +KSL + +    V     S  ++  R   + LT+   ++G+H
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLH 138


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 417 NINYDGPVKI--FVAATAEQKLLLKKTRDALLPFYKYISICKN 539
           NI     VKI  ++   +E + L     + L P YKY+ + +N
Sbjct: 288 NIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIEN 330


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 417 NINYDGPVKI--FVAATAEQKLLLKKTRDALLPFYKYISICKN 539
           NI     VKI  ++   +E + L     + L P YKY+ + +N
Sbjct: 303 NIEGTHYVKIVYYLGIPSEARELQLPGCEVLCPLYKYLQLIEN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,378
Number of Sequences: 438
Number of extensions: 2993
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)