Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13k08
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.2  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   3.5  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   3.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 363 QDAQRGGAAKLVLRTRVAPVHRV 431
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 363 QDAQRGGAAKLVLRTRVAPVHRV 431
           +D   GG A  + +T VAP+ RV
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERV 34


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 462 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 361
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 462 RLGVLEQAQRRRGAL--GQHVFVKPILQLRRVVHLG 361
           +LG L+    +R  +  G  ++V+P+ ++  VVH G
Sbjct: 65  QLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAG 100


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 297 RIAVFNAIFFADINTCLLIRRFV 229
           ++A   AIF  D+ T  LIR+++
Sbjct: 274 KLACPPAIFIFDLTTDTLIRKYI 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,585
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)