Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13k03
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   0.51 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   0.67 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   1.6  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   4.7  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.3  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    23   8.3  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 0.51
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 1   GLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRR 126
           G+ + VL L         RDY+   N  +V+ K+C SIL R+
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK 186


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 119  HKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINT 15
            HKML + L+ +  E   ++ S+  +L + SH+I T
Sbjct: 973  HKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRT 1007


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 58  DYIKGENSFNVAFKNCESILCRRISFQTVLMTCAVLLLLF 177
           +++  EN+F +A +N   I C  I F   + + ++L+  F
Sbjct: 91  NFLPFENTFEMALRNDFQIFCTSILFTCYIQSFSLLISNF 130


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 37  CCKKELRDYIKGENSFNVAF---KNCESI 114
           CC K ++D++ G N+ ++ +   KN E I
Sbjct: 558 CCLKNVKDFVCGANTISMQWNLQKNMEFI 586


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 25 LCDECCKKELRDYIKGENSFN 87
          +C+ C KK+L D+    + F+
Sbjct: 17 ICESCLKKQLYDFYHKRDEFS 37


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 112 ILCRRISFQTV 144
           +LCRRISF+T+
Sbjct: 69  VLCRRISFRTL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,018,450
Number of Sequences: 5004
Number of extensions: 16107
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)