Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13j23
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   2.0  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine re...    27   8.1  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 514 PYASSHPPLRSRLHQPDHQIPDS 582
           P +S HPPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 352
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 495 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 388
           + ++ GV   +PP  VT+ V+       G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268


>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 522 IKPPSPAISATSTRSSNPRFHTPTT 596
           ++PPSPA+SA S R    R+H PT+
Sbjct: 269 MQPPSPAVSAFSPR----RYHHPTS 289


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 522 IKPPSPAISATSTRSSNPRFHTPTT 596
           ++PPSPA+SA S R    R+H PT+
Sbjct: 269 MQPPSPAVSAFSPR----RYHHPTS 289


>AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein56 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 398 SLKIPVTVDLCWTT-ADV--TVEGGNVLATPSSSRITIGGLALM 520
           ++KIP+ + L W+T  D+  TV  G  +  PS+S + +G L  +
Sbjct: 56  NMKIPLLISLAWSTNLDLMFTVYSGPYIFFPSASGVPLGLLGYL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,119
Number of Sequences: 27780
Number of extensions: 246199
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)